MmuEX0036925 @ mm9
Exon Skipping
Gene
ENSMUSG00000025839 | Pramel7
Description
preferentially expressed antigen in melanoma like 7 [Source:MGI Symbol;Acc:MGI:2156391]
Coordinates
chr2:87330981-87337250:-
Coord C1 exon
chr2:87337004-87337250
Coord A exon
chr2:87332292-87332601
Coord C2 exon
chr2:87330981-87331562
Length
310 bp
Sequences
Splice sites
3' ss Seq
TCTCCTAATTTTTCCCCCAGGAT
3' ss Score
10.79
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGTGAGTCCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAACAAAACAAAACAAAAAAACCATCCAATCAGATGGCAGCATTTATCAGTGGTGGTGCTGATAAAAGGCAAGAAGAAAAAGATCTGTAAAGGTGTCATTGGAGCCAGAGAAGACACTCAGATCCCGGGACTCTGTCACCTGTATCCTAGTCAG
Seq A exon
GATCATCTCCCTAAAGATCTGTCAGAATGGTCAGTGCCCCACCCACACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGAATGAAGTATTGACCGTCTCTGATGCGGAGTGCCTAATAAGGGAATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTCAAAAAAAACCAAAGACAATTATGATCCTGGTGGAGCACTGGCCCTACCCTTGCCTTCATGTTGGGTTGTTGATTGATAAACCCAACTTTCAGATCTTCCAGGCTATACTGGATGGAGTAGACACATGGCTGAAACGGAAGTATCGCCCCAG
Seq C2 exon
GATGGGAAGGCTTAAAAAGGTTGACTTCAGGGATGCACAGCATCATGCTTCCTTAGATATGCAGGATGAGAGAGAGGGTAGAGACTACTTAGTAGGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCACTCAAGAACAAGGAAAGAGCGTTTGAAGCTGTTCCATGACCTTTCCTTTATGTCTTCTCTGCATGAGGATAAACACCAAACACTGTTATTGGAGTGGGCAAAGGAAAGGACGAGTTTCCTGCATCTGTGCTGTGAGAAGTTGGAGATAGGAGCAGTAGAAGTGTCTAAGGTCAGGAATGTATTAAAATTTCTACAGCCAGAGCTCATCAAGGAGTTGAAACTGAATACAGTGGGGAATCTGTCCAAACTGGCAAAATTCGTACCTTTCATTAGAAAGATGAGAAACCTTCAGAAACTCATGCTAGTACGCACCTTTGGAACAAGGACTTTCACTCAAGAGGAGAAGCAGAACATCAGCAAGATCATTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025839_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGCTGATAAAAGGCA
R:
GTCCTTTCCTTTGCCCACTCC
Band lengths:
344-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types