MmuEX0036924 @ mm9
Exon Skipping
Gene
ENSMUSG00000025839 | Pramel7
Description
preferentially expressed antigen in melanoma like 7 [Source:MGI Symbol;Acc:MGI:2156391]
Coordinates
chr2:87332292-87337250:-
Coord C1 exon
chr2:87337004-87337250
Coord A exon
chr2:87334861-87334932
Coord C2 exon
chr2:87332292-87332601
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACATTAATACTCTCTCCAAGGAC
3' ss Score
5.8
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAAGTGAGTCCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAACAAAACAAAACAAAAAAACCATCCAATCAGATGGCAGCATTTATCAGTGGTGGTGCTGATAAAAGGCAAGAAGAAAAAGATCTGTAAAGGTGTCATTGGAGCCAGAGAAGACACTCAGATCCCGGGACTCTGTCACCTGTATCCTAGTCAG
Seq A exon
GACTGGAGAGATGGCCCAGCAGATAAAACACCACACTGGCTGCTCTCCCAGGTGACCTGGTTTCCTTTGCAA
Seq C2 exon
GATCATCTCCCTAAAGATCTGTCAGAATGGTCAGTGCCCCACCCACACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGAATGAAGTATTGACCGTCTCTGATGCGGAGTGCCTAATAAGGGAATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTCAAAAAAAACCAAAGACAATTATGATCCTGGTGGAGCACTGGCCCTACCCTTGCCTTCATGTTGGGTTGTTGATTGATAAACCCAACTTTCAGATCTTCCAGGCTATACTGGATGGAGTAGACACATGGCTGAAACGGAAGTATCGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025839_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACACTCAGATCCCGGG
R:
TCCCTTATTAGGCACTCCGCA
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types