MmuALTA0014260-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024393 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:MGI Symbol;Acc:MGI:1915467]
Coordinates
chr17:35150823-35152785:-
Coord C1 exon
chr17:35152618-35152785
Coord A exon
chr17:35150903-35150905
Coord C2 exon
chr17:35150823-35150902
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTTATCTCGCTTTTCTCCAGCAG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GCCGTTCCCATATCCAGAGACTGGGAGCTGCTCCCTAGTGCTTCTACTTCAGCTGAGCCACAGCCCAAGAGCCTGGGTTCTGGGCAGTGTGTTCCAGAGCCCAGCCCTTCAGGTCAGCGTCCGTACCCTGAGGTCTTCTATGGCAGCCCTGGACCTCCTAATTCCCAG
Seq A exon
CAG
Seq C2 exon
GTCTCTGGGGGTGCACCCATCGACTCTCAGTTACATCCCAACAGTGGAGGCTTCCGTCCTGGGACACCCTCATTGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024393-51-51,51-50,51-48-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTTCTATGGCAGCCCT
R:
GAAGCCTCCACTGTTGGGATG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types