RnoALTA0031277-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5141588-5143167:-
Coord C1 exon
chr20:5143000-5143167
Coord A exon
chr20:5141674-5141676
Coord C2 exon
chr20:5141588-5141673
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CCTGTCTTGCTTTTCTCCAGCAG
3' ss Score
8.83
Exon sequences
Seq C1 exon
GCCGTGCCCGTATCCAGAGACTGGGAGCTGCTCCCCAGTGCTTCTGCTTCAGCTGAGCCACAGGCCAAGAGTCTGGGTTCTGGGCAGTGTGGTCCAGAGCCCAGCCCTTCAGGTCAGCGTCTGTACCCTGAGGTCTTCTATGGTAGCCCTGGACCTCCGAACTCCCAA
Seq A exon
CAG
Seq C2 exon
GTCTCTGGGGGTGCACCTATCGACTCCCAGTTACATCCCAGCAGTGGAGGCTTCCGGCCTGGGACACCCTCAGTACACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852-42-39,42-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.630
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCAGGTCAGCGTCTGTA
R:
AACTGGGAGTCGATAGGTGCA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]