RnoINT0118587 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5141588-5143167:-
Coord C1 exon
chr20:5143000-5143167
Coord A exon
chr20:5141674-5142999
Coord C2 exon
chr20:5141588-5141673
Length
1326 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
GTCTTGCTTTTCTCCAGCAGGTC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GCCGTGCCCGTATCCAGAGACTGGGAGCTGCTCCCCAGTGCTTCTGCTTCAGCTGAGCCACAGGCCAAGAGTCTGGGTTCTGGGCAGTGTGGTCCAGAGCCCAGCCCTTCAGGTCAGCGTCTGTACCCTGAGGTCTTCTATGGTAGCCCTGGACCTCCGAACTCCCAA
Seq A exon
GTAAGCTCCGTTTTTAACCATAAGCCCCCTTTCTGTCTTGTCTTTTCTGTTCTTTTTCCTTTTCATTTTTGTTTTGTTTTTGTTTTTGTTTGGGTTTTTTTTTTTTTGGAGACAGTGCCTGGAACTTAGTATGTAGACCAGGCTGGCCTCAAACTCAGATTCACCTGCCTCTTCCTTCCAGGTGCTGGGATTAAAGATGTACCCTACCAACTTGCTCAGCTGGATAATGGTTTCTTTTGTTTGTTTTTTTAAATTATTTTTTTAATGTTTTTAATTTGTGTGTTTCCGAGCGGGTGTGTGTCCCAGTGCATGTGTTACGCTGAAAGCAGGGTTCAGAGGACAGCTTTGCTCCTCTCCACCTCTACATGGATGGGTACAGGTTACCATGTGTCAGCAGCAGGGCCTTTACCCCCTCACCTGCCCTGAAGTTAGTTAATTTATAAATCATTTCCACTGTGTTCCATTTTTCTTTTTCCTCCAAGGATGGGTGGTCTGGTGCCTCCACCCCCTCAGGAAGTTTTTATTTCATGTGCATGGGTGTTCTGCCTGCATGTCTGCACCATGTGTGTAGCGTGTCCTTGGAACTAGAGAACAGCCAGTGTACCACTGGGGTTTCTCTCTCTGTTATAAGTTATGTGTGGGTAGGTACACATCATACATGATTGCAGGTGCTCACGGAGGCCAGCAGTCTGGTTTCCCTAGAGCCAGAGTTACGAATGGCCATAGGCCTGGGAAAGTATGCTTGTTAACTGACAGCCATCTCTCCATACCTGTCCTCATATTTTATTTTGAGACAGGGTTTTGCCAAGTTAATCAAATTGGCCTTGAGCTTACTCTATAGTATAGACTGACCTTGAACTTGATGGTTGCCACCTTTGACATCTGTCTTCCTAGGAACTAAGGTTCTACCAGACTGCTTTTTCACTTGTACTGTGTCCAGGCCCTTGGTCTGTGGGATGGTGCTGCCCACTTTGGTGTGGGTGCTCTTCCCTTGGTTAATTAACCCTCCCTTCTAAAACACCCAAACACAGAAGGGTGCCTTATTGCCACCTATGTGTTTCTCAATCCCGTTGACAGCCAAGATTACCCATCACACTGTGCTAGAGATCAGACTTGGGGGGGCTCAGTGTCAGTGAAGCCCTCTCCCACTATGCAGTACATATACATATATATATATATATGCATATATATATATATGCGCATACACACACACACACATATATATATATATATGCATATATATAGATAGATAGATAGATGCAACCCAAGTTTGCTTTTCTTGAACAAAGACACTGGAGCTGCTCCTGTCTTGCTTTTCTCCAGCAG
Seq C2 exon
GTCTCTGGGGGTGCACCTATCGACTCCCAGTTACATCCCAGCAGTGGAGGCTTCCGGCCTGGGACACCCTCAGTACACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGCCCGTATCCAGAG
R:
CTGTACTGGTGTACTGAGGGTG
Band lengths:
254-1580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]