RnoEX0070283 @ rn6
Exon Skipping
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5141588-5143167:-
Coord C1 exon
chr20:5143000-5143167
Coord A exon
chr20:5142771-5142818
Coord C2 exon
chr20:5141588-5141676
Length
48 bp
Sequences
Splice sites
3' ss Seq
CACCTGCCTCTTCCTTCCAGGTG
3' ss Score
12.16
5' ss Seq
ATGGTTTCT
5' ss Score
-5.61
Exon sequences
Seq C1 exon
GCCGTGCCCGTATCCAGAGACTGGGAGCTGCTCCCCAGTGCTTCTGCTTCAGCTGAGCCACAGGCCAAGAGTCTGGGTTCTGGGCAGTGTGGTCCAGAGCCCAGCCCTTCAGGTCAGCGTCTGTACCCTGAGGTCTTCTATGGTAGCCCTGGACCTCCGAACTCCCAA
Seq A exon
GTGCTGGGATTAAAGATGTACCCTACCAACTTGCTCAGCTGGATAATG
Seq C2 exon
CAGGTCTCTGGGGGTGCACCTATCGACTCCCAGTTACATCCCAGCAGTGGAGGCTTCCGGCCTGGGACACCCTCAGTACACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.125 C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000092322fB11453
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTGTACCCTGAGGTCTT
R:
ACTGGTGTACTGAGGGTGTCC
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]