MmuALTA0014273-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162709533-162710829:-
Coord C1 exon
chr1:162710283-162710829
Coord A exon
chr1:162709618-162709686
Coord C2 exon
chr1:162709533-162709617
Length
69 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTACTGTTTCTTTGAGCAGAAG
3' ss Score
5.84
Exon sequences
Seq C1 exon
TCCCTCCAAGCCTCCAGTACCTGATAACGATGAAATATGGAAGCAAAGACGAAAACAACAGTCTGAAATATCTGCAGCAGTAGAGCGTGCTCGTAAACGCCGTGAGGAGGAAGAGCGAAGGATGGAGGAACAGAGGAAGGCAGCGTGCGCAGAGAAATTGAAGCAGCTGGATGAGAAGCTCGGGATCATAGAAAAGCAGCCATCTCCAGAGGAACTTAGAGAAAGGGAGAGAGAGAAGGAGCGGGAGAGAGAACTTGAAAAAGAGAAAGAGCGGGAGCTTGAGAAAGAGCAGGAAAAGCAGAGGGAAATGGAGAGGGCAAGACAGCAAGAGAAAGAGTTAGAACAACAGAGAGAAAAGGAGCAGGAACTACAAAGGCTGAGAGAACAGGAAAAGGAGGGCGAGCCAAAGGAACAGGAAAAAGAGGAAAAAGTTGAACCCCAAGAGCCTGTTGTAGAGCCTGCGACAGAAAACCAAGAAAGTGAAAACAACTGCAAGAAAG
Seq A exon
AAGAAGAACCAATTTTCACTAGGCAGGACAGCAATCGCAGTGAAAAGGAGACCACACAAGTGGTACAAG
Seq C2 exon
AAGCAGAACCTGAATCGGGGGCTCAACCTCGACCTGGCTATTTCAAACAGTTTCAGAAATCATTGCCACCACGATTTCAGCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-27-28,27-27,27-26-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCCAAAGGAACAGGAAA
R:
GCTGAAATCGTGGTGGCAATG
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types