MmuALTA0014915-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061898 | Rbak
Description
RB-associated KRAB zinc finger [Source:MGI Symbol;Acc:MGI:1927369]
Coordinates
chr5:143179486-143180730:-
Coord C1 exon
chr5:143180549-143180730
Coord A exon
chr5:143179543-143179545
Coord C2 exon
chr5:143179486-143179542
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TCAGCGAGCTTTTCCTCCAGCAG
3' ss Score
3.19
Exon sequences
Seq C1 exon
TGGTGTGTCGAGGCTACCTTCCCTCCCGCAGCCTTTGCGTTCGCTAAGCTGGAGTTGCCGAGCCTGCAGGGCCGAGGCCGGAGCTTCCGGGGCGGCAGCGAACAGACTCGGCTGTGCGGGCTAGGGAGGCCTAGCGAGAGCTCGGCGCGGAGGCTGACAGGGGCAGCGGAGACGCCTGCTCG
Seq A exon
CAG
Seq C2 exon
GTCAGTCAGCAGTGTCTACAGTTCCCCCAAGAGGAGCAGAACATGAGCAGATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061898-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGGAGGCCTAGCGAGAG
R:
GCTCCTCTTGGGGGAACTGTA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types