RnoALTA0033207-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001099 | Rbak
Description
RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]
Coordinates
chr12:13428685-13430083:+
Coord C1 exon
chr12:13428685-13428916
Coord A exon
chr12:13430022-13430024
Coord C2 exon
chr12:13430025-13430083
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGAGTGACCTTTTCCTCCAGCAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
CGCGTTCCTGTGCGTGTGCAGGGCCACTGCGCCGCTGTGACTCCTGCAGGTCCGTCGTCGAGGCTACCTTCCTTCCCACAGCTTTTGCACCCGCTAAGCTGGAGTCGCCGAGCCTGCGGGAACGAGACCGGAGCTTCCGGGGCGGCAGCGAACAGACTCAGCTGTGCTGGCCTGGGAGGCCTAGAGGGAGCTCGGCGCGGAGGACGACAGTGGCGGCGGGGCCGTCTGCTGG
Seq A exon
CAG
Seq C2 exon
GTCAGTCGTCAGTGTTGTCTACGGTTTCCCAAGAGGAGCAAAAGATGAGCATATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001099-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACAGACTCAGCTGTGCT
R:
CCGTAGACAACACTGACGACTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]