MmuALTA0015005-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116582822-116586095:-
Coord C1 exon
chr9:116586018-116586095
Coord A exon
NA
Coord C2 exon
chr9:116582822-116582838
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTGCTGATACCTCTCCCCAGACG
3' ss Score
7.65
Exon sequences
Seq C1 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
NA
Seq C2 exon
ACGGTGGCCCCCTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-45-47,45-46-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types