RnoALTA0033358-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124840161-124844312:-
Coord C1 exon
chr8:124844235-124844312
Coord A exon
NA
Coord C2 exon
chr8:124840161-124840261
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TTGCTGATACCTCTCCCCAGACG
3' ss Score
7.65
Exon sequences
Seq C1 exon
TATATGACCGCTGCTCCCATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
NA
Seq C2 exon
ACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCGCCGGCATATTCATTCCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-41-36,41-35,41-34-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000041548fB12276
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCCCCAGTACACGCCT
R:
GTTCACTGGGTGTGTCCACTG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]