MmuALTA0016222-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112425696-112426758:-
Coord C1 exon
chr5:112426726-112426758
Coord A exon
NA
Coord C2 exon
chr5:112425696-112425722
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTTGTGTGCTCAGTAGCAGAAG
3' ss Score
-3.43
Exon sequences
Seq C1 exon
TTAACCAAGACAGTTTTGAACATGCATTGGAAG
Seq A exon
NA
Seq C2 exon
AAGCGGCAGCAGAGTCCTCACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153-31-35,31-34,31-33-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types