MmuEX0041887 @ mm10
Exon Skipping
Gene
ENSMUSG00000058153 | Sez6l
Description
seizure related 6 homolog like [Source:MGI Symbol;Acc:MGI:1935121]
Coordinates
chr5:112424623-112426758:-
Coord C1 exon
chr5:112426726-112426758
Coord A exon
chr5:112425614-112425728
Coord C2 exon
chr5:112424623-112424725
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCAGTGGCTTGTGTGCTCAGTAG
3' ss Score
3.08
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTAACCAAGACAGTTTTGAACATGCATTGGAAG
Seq A exon
TAGCAGAAGCGGCAGCAGAGTCCTCACTGGAAGGTGGGAACATGGCGCTGGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTACGTCACGAG
Seq C2 exon
GTGCCGACAATACTCCAGCCTCCGCCTACCCCTCATGTACTCCCACCCCTACAGTCAGATCACCGTGGAGACTGAGTTCGACAATCCCATCTACGAGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058153_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGACAGTTTTGAACATGCA
R:
CCCAGTCTCGTAGATGGGATTG
Band lengths:
133-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types