HsaEX0057555 @ hg19
Exon Skipping
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26769417-26773741:+
Coord C1 exon
chr22:26769417-26769449
Coord A exon
chr22:26771541-26771655
Coord C2 exon
chr22:26773639-26773741
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCACTGGCTCCTGTGTTCAGTAG
3' ss Score
5.37
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTAATCAAGACAGTTTTGAACATGCTTTAGAAG
Seq A exon
TAGCAGAAGCGGCAGCAGAGACGTCGCTGGAAGGGGGGAACATGGCCCTGGCTATCTTCATCCCGGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACAAG
Seq C2 exon
ATGTCGCTACTATTCCAACCTCCGCCTGCCTCTGATGTACTCCCACCCCTACAGCCAGATCACCGTGGAAACCGAGTTTGACAACCCCATTTACGAGACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACAGTTTTGAACATGCTT
R:
CCCTGTCTCGTAAATGGGGTTG
Band lengths:
132-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)