DreEX6089839 @ danRer10
Exon Skipping
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44819907-44820810:+
Coord C1 exon
chr10:44819907-44819942
Coord A exon
chr10:44820416-44820530
Coord C2 exon
chr10:44820705-44820810
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTAATGGTTGTGTGCTCCAGTGT
3' ss Score
4.53
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCAATCATGAATGTTCTGGCAATCATGCATTAGAGG
Seq A exon
TGTCTGAGGCGGCTGCAGAATCCTCTTTTGATGGGGGAAGTTTGGCTCTGGCTATATTCATCCTGGTGCTGCTGGTGTCTGCGGTGCTCGGAGGAACTTACATCTACATCACCAG
Seq C2 exon
ATGCAGATATCATTCAAACCTGAGACTTCCTCTGATGTATCCGCATCCCTACAGCCAGATCACCGTGGAGACAGAGTTTGACAACCCTCTCTATGAGACTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCATGAATGTTCTGGCAA
R:
CCCTCCAGTCTCATAGAGAGGG
Band lengths:
142-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]