BtaEX6073566 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68310619-68313838:+
Coord C1 exon
chr17:68310619-68310651
Coord A exon
chr17:68313507-68313621
Coord C2 exon
chr17:68313736-68313838
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCACCGGCTGTGTGTTCAGTAG
3' ss Score
4.7
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TTAATCAAGACAGCTTTGAACACGCCTTAGAAG
Seq A exon
TAGCAGAAGCGGCAGCAGAGACATCTCTGGAAGGAGGAAACATGGCTCTGGCTATCTTCATCCCTGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACCAG
Seq C2 exon
GTGCCGTTACTACTCCAACCTCCGCCTGCCTCTGATGTATTCCCACCCCTACAGCCAGATCACCGTGGAGACCGAGTTCGACAACCCCATCTACGAGACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-'14-22,'14-19,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGACAGCTTTGAACACGC
R:
CGTCTCGTAGATGGGGTTGTC
Band lengths:
130-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]