RnoEX0079963 @ rn6
Exon Skipping
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50234981-50238116:+
Coord C1 exon
chr12:50234981-50235013
Coord A exon
chr12:50237067-50237178
Coord C2 exon
chr12:50238014-50238116
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTGTGTGCTTAGTAGCAG
3' ss Score
1.44
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTAACCAAGACAGTTTTGAACATGCGTTGGAAG
Seq A exon
CAGAAGCAGCAGCAGAGTCCTCACTGGAAGGCGGGAACATGGCCCTAGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTATGTCACGAG
Seq C2 exon
GTGCCGACAATATTCCAGCCTCCGCCTGCCCCTCATGTACTCCCATCCCTACAGCCAGATCACTGTGGAAACTGAGTTCGACAACCCCATCTATGAGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-'29-31,'29-29,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACAGTTTTGAACATGCGT
R:
CCCAGTCTCATAGATGGGGTTG
Band lengths:
132-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]