GgaEX6014008 @ galGal3
Exon Skipping
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7353782-7354482:+
Coord C1 exon
chr15:7353782-7353814
Coord A exon
chr15:7354104-7354218
Coord C2 exon
chr15:7354393-7354482
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGAGATCATGTCCTTTTAGTAG
3' ss Score
1.13
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
Seq A exon
TAGCAGAAGCTGCTGCAGAGACATCGTTGGAGGGGGGAAATATGGCCTTGGCCATCTTCATCCCAGTGCTGATCATCTCCTTGCTGCTGGGAGGAGCCTACATCTACATCACCAG
Seq C2 exon
GTGCAGGTACTACTCCAGCCTCCGCCTGCCCCTCATGTACTCCCACCCCTACAGCCAGATCACAGTAGAAACGGAGTTTGACAACCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577-'14-19,'14-16,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCAGGACAGCTTTGAGC
R:
TCGGGTTGTCAAACTCCGTTT
Band lengths:
122-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]