MmuALTA0016546-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6109963-6114022:-
Coord C1 exon
chr6:6113938-6114022
Coord A exon
NA
Coord C2 exon
chr6:6109963-6110021
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATGGCACGCGTGAAGCAGAAG
3' ss Score
-2.22
Exon sequences
Seq C1 exon
GCGCATGACCTTAGCAGACATTGAGCGGATCGCCCCTCTAGAGGAAGGAATGTTACCCTTCAACTTGGCCGAGGCCCAGAGGCAG
Seq A exon
NA
Seq C2 exon
AAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTGCAGCTCGCAGAGTCAGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-33-28,33-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACCCTTCAACTTGGCCG
R:
GTAGGCTGACTCTGCGAGCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types