MmuALTA0016546-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000015112 | Slc25a13
Description
solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 [Source:MGI Symbol;Acc:MGI:1354721]
Coordinates
chr6:6059963-6064022:-
Coord C1 exon
chr6:6063938-6064022
Coord A exon
NA
Coord C2 exon
chr6:6059963-6060021
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATGGCACGCGTGAAGCAGAAG
3' ss Score
-2.22
Exon sequences
Seq C1 exon
GCGCATGACCTTAGCAGACATTGAGCGGATCGCCCCTCTAGAGGAAGGAATGTTACCCTTCAACTTGGCCGAGGCCCAGAGGCAG
Seq A exon
NA
Seq C2 exon
AAGGCCTCGGGTGATGCTGCTCGGCCCTTTCTTCTGCAGCTCGCAGAGTCAGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015112-20-17,20-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(14.3=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACCCTTCAACTTGGCCG
R:
GTAGGCTGACTCTGCGAGCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: