Special

MmuALTA0016659-3/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165109028-165113327:-
Coord C1 exon
chr2:165113284-165113327
Coord A exon
chr2:165109036-165109103
Coord C2 exon
chr2:165109028-165109035
Length
68 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCTGCCTCTCTTCTCTCCAGCAG
3' ss Score
9.69
Exon sequences
Seq C1 exon
CTCGAGCTTCCGGCAGGAGGCTCCCGGCGAGAGCCTGGGCGGAG
Seq A exon
CAGTAGCGCTGGGGACCTGTGACCGCTGCATCCAGCTAACCATGGGACCGTTTGGCTCTGGCCACCAG
Seq C2 exon
CCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-0-7,0-6,0-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0089215=EamA=PU(17.6=62.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000104923





     
                   









    
Main Skipping Isoform:
ENSMUSP00000104922





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000120036, ENSMUSP00000125708
          









    
Other Skipping Isoforms:
ENSMUSP00000104921, ENSMUSP00000116288, ENSMUSP00000118227, ENSMUSP00000118605, ENSMUSP00000119071, ENSMUSP00000123757
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr20:44987406-44987407 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr13:75807396-75807397 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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