MmuALTA0016659-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165283528-165287824:-
Coord C1 exon
chr2:165287784-165287824
Coord A exon
chr2:165283536-165283603
Coord C2 exon
chr2:165283528-165283535
Length
68 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CCTGCCTCTCTTCTCTCCAGCAG
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGCTTCCGGCAGGAGGCTCCCGGCGAGAGCCTGGGCGGAG
Seq A exon
CAGTAGCGCTGGGGACCTGTGACCGCTGCATCCAGCTAACCATGGGACCGTTTGGCTCTGGCCACCAG
Seq C2 exon
CCCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-0-6,0-5,0-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF084496=UAA=PU(16.9=62.5)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types