RnoALTA0036977-7/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161807880-161810728:-
Coord C1 exon
chr3:161810638-161810728
Coord A exon
chr3:161807912-161808234
Coord C2 exon
chr3:161807880-161807911
Length
323 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCCGCCTCTCTTCTCTCCAGCTG
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTCTTTGAAGCACTAAGCTGTACAGCCACATTCCGCTGAGGAGCTAGAGGGCAGCCAGGTGTTACAGCATCGTTGCCCACCCTGCTCTGAG
Seq A exon
CTGTATAGCTGGGGACCCGTGACTGTTGCATCCAGCTAACCATGGAACAGTTTGGCTCCAGCCACCAGCCCCTTAGGTGAGGACTCAGTCAAGGGCCCACTGCCCATTCCACATCATGGAGGCCGAGAGGACTCTTCCAGCCAGGGGAGCCGCCCTTTGAAAACGGTGGTCCAGTCCTGCTGGTTCTCCCTACCAGCCACCTTCAAGAGAGGCCCCTATTCCTGCTGGCCCACGGATGGGGAGGTGGGCCCTGGACGTCGCCTTTGTGTGGAAGGCAGCGCTGACCCTGGGCCTGGTTCTTCTATATTACTGCTTCTCCATAG
Seq C2 exon
GCATCACGTTCTACAACAAATGGCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649-6-11,6-10,6-9,6-8,6-7,6-6,6-5-7/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]