MmuALTA0016747-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75546462-75546921:+
Coord C1 exon
chr1:75546462-75546613
Coord A exon
chr1:75546772-75546814
Coord C2 exon
chr1:75546815-75546921
Length
43 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CCCCGCCCTCCTTCCTCAAGGCT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTGGACTGCAGGCTCCGGCGCCTGCGTCCGCCTGGCCGGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGAGCTTGCGGGGAGGGACATGGGGCGCGGCGGCTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAG
Seq A exon
GCTCCCCAAGAGGTCTCTGCAGCGCCCCCTTCTTCTCACCCAG
Seq C2 exon
GGTTTGGGTCCCATAGTGATTGAGAGACTCCTAAGTCTTCAGTCTTCAGCCCTGCCATGGCTAATGGGGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576-1-7,1-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGCGGGGAGGGAC
R:
CCATTAGCCATGGCAGGGC
Band lengths:
133-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types