MmuINT0147157 @ mm10
Intron Retention
Gene
ENSMUSG00000006576 | Slc4a3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
Coordinates
chr1:75546266-75546921:+
Coord C1 exon
chr1:75546266-75546382
Coord A exon
chr1:75546383-75546771
Coord C2 exon
chr1:75546772-75546921
Length
389 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CCCCGCCCTCCTTCCTCAAGGCT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTGCACCCGCCCCTCCTCCCCCCCCCCCGCAATGCGTGGGGCGCCTGGAGAGGGGTCTTGCGGGCAGGTGGGATCCTGCGGGGACCCGAGCGCGGGGCCCACGCTGGCCTGGTCGGG
Seq A exon
GTAAGTCAGGGATCGTCCACTCCCATTGTGCGGCCGGGCGGCGGCGGGCTGGCACAGCCGAGCGCTAGGAGGTGGAGCCGTGGACTGCAGGCTCCGGCGCCTGCGTCCGCCTGGCCGGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGAGCTTGCGGGGAGGGACATGGGGCGCGGCGGCTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAGGTACTTAAGGGCAAGGCGTGGGCGCCGGGCCGGGTAGGGACAGCGGACTAACATGGACCGGGTTGGGCCTCGGAAGGGAGAGCGGGCTGGGCACCGGGATGGAGCACCCCGGAGGGGGCCCACCAGCGCAATTTCTGACCCCGCCCTCCTTCCTCAAG
Seq C2 exon
GCTCCCCAAGAGGTCTCTGCAGCGCCCCCTTCTTCTCACCCAGGGTTTGGGTCCCATAGTGATTGAGAGACTCCTAAGTCTTCAGTCTTCAGCCCTGCCATGGCTAATGGGGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006576:ENSMUST00000124341:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGGGTCTTGCGG
R:
GGATCACCCCATTAGCCATG
Band lengths:
190-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types