HsaINT0153396 @ hg38
Intron Retention
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219627565-219628043:+
Coord C1 exon
chr2:219627565-219627745
Coord A exon
chr2:219627746-219627959
Coord C2 exon
chr2:219627960-219628043
Length
214 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CTGGGTCTCGGGTCCCCTAGTGA
3' ss Score
4.86
Exon sequences
Seq C1 exon
GCGGAGCGGAGCGCGAGGAGGTGGAGCCGCGGGCTGCGGGCTCCGGCGCCTGCGTCCGCCCGGCCAGCCCGGCTCTGCGCTGCGAGAGGCCGGACGGCAGTCGCGGCTGCGCTCGGGAGAGAGCGCGGGGGACATGGGGCGCGGCGGCCCGCCTGGGCCTCGCAGGCTCCGGAGCCCCGAG
Seq A exon
GTACCGCGGGGCGGGGCACGCCGGGCAGGGCGGGGGACCCGGGCTGTCCCGGGCGTGGCTGGGCCTCGGAGGGGCGCTTGGGCCGGGAGCGTGCATCCGGCTCCCGGGTGGGGGGCGCCAGCGCAAGGAACCTGACCCCGCCCTCCTCCCCCAGGGCTCCCCGCTAGGCCCCCTCAGTGGCCCCTCCTTCTCACCTGGGTCTCGGGTCCCCTAG
Seq C2 exon
TGAGCGAGAGCGTCCCCAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923:ENST00000273063:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCGAGGAGGTGGAG
R:
GCGGGATCACTCCGTTGG
Band lengths:
228-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains