MmuALTA0017856-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36591959-36593251:-
Coord C1 exon
chr5:36593158-36593251
Coord A exon
chr5:36592143-36592344
Coord C2 exon
chr5:36591959-36592142
Length
202 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGCTTATCTGGCTTTATAGGGA
3' ss Score
7.74
Exon sequences
Seq C1 exon
AGTAACTCAGGTACCAGCCAGGAGGATCCAGACTGTGCCAGTCCTGGGGTCCCGCCAACCTCTTCTCTTGTTTTCGGGACTCCGAGGAGGTCAG
Seq A exon
GGAAGGCCACTGGAAGCCCTGGGAACATTCTGGAGGCCATAGGTTGGCTGGAATCAAAGCAGCAACTTCTTGGAGATGGGTTGTCCCCTTAGTCTTTTTTGTCCCCTTGGTCTGCCTCGTCCCCGCCCCCGATACTGTTGGGGCACAAGCACAAAGAAGGCCTTCTAGACACCAGCTACTATCCTGTTCTTCACCCTTCCAG
Seq C2 exon
GACATGTCCTCTGGATCTCCATTTTCCATTCAAACAAGGCCAAAGTAGGGCACAGTGACCGCGTGCTTATAAACAGCATTCAGGAGGCTGTAGCAGGAAGATGGCAAGTTCAAGTCCAGCCTGGGTTACATTGGGAGCTCCTGTTTGAAAACACAGAGTTTACTCCCCGTTTCTTGTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAACTCAGGTACCAGCCAGG
R:
GCAGGACAAGAAACGGGGAG
Band lengths:
276-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types