MmuEX6017295 @ mm10
Exon Skipping
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36584782-36593251:-
Coord C1 exon
chr5:36593158-36593251
Coord A exon
chr5:36591959-36592142
Coord C2 exon
chr5:36584782-36584836
Length
184 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCTTCACCCTTCCAGGAC
3' ss Score
11.22
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTAACTCAGGTACCAGCCAGGAGGATCCAGACTGTGCCAGTCCTGGGGTCCCGCCAACCTCTTCTCTTGTTTTCGGGACTCCGAGGAGGTCAG
Seq A exon
GACATGTCCTCTGGATCTCCATTTTCCATTCAAACAAGGCCAAAGTAGGGCACAGTGACCGCGTGCTTATAAACAGCATTCAGGAGGCTGTAGCAGGAAGATGGCAAGTTCAAGTCCAGCCTGGGTTACATTGGGAGCTCCTGTTTGAAAACACAGAGTTTACTCCCCGTTTCTTGTCCTGCAG
Seq C2 exon
ACGCAAGTTACAATGAGGCTTTATCTAGACCGCTTCTGGGGACTGATGGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-'0-5,'0-1,1-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAGGTACCAGCCAGGAG
R:
CTTTTGCCATCAGTCCCCAGA
Band lengths:
146-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types