Special

MmuALTA0017881-3/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24322149-24326998:-
Coord C1 exon
chr17:24326889-24326998
Coord A exon
chr17:24323142-24323232
Coord C2 exon
chr17:24322149-24323141
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
AATGGTTTTCAATCCTACAGGGT
3' ss Score
8.16
Exon sequences
Seq C1 exon
TTGAACTTTCTAGATGCAAGAGAAATCAGAGTGGTGTGAATATTTACCGCAAGTCACTGAAGTGGACCCCTGTGACATTGTTGGACAGTTCTACCATCCAGATCAGAAAG
Seq A exon
GGTGTGTGGGATGACAGACTGGTTAACAGAAAACCCCCGAAGCTGGGGCTGCAGGATTTAGCTGCTTTTTGTTCCCTTCCTGGCAGCCTAG
Seq C2 exon
GACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTGCTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-5-6,5-5,5-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000094989





     
                   









    
Main Skipping Isoform:
ENSMUSP00000128868





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000036458, ENSMUSP00000126107, ENSMUSP00000127005, ENSMUSP00000128001
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:2546033-2546034 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:1998750-1998751 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGAAGTGGACCCCTGTGACAT

				
R: 
CTGTAGCTCCGTGCAGTTCAG

				
Band lengths: 
180-271

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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