MmuEX0046469 @ mm9
Exon Skipping
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24322149-24342507:-
Coord C1 exon
chr17:24342419-24342507
Coord A exon
chr17:24326889-24326998
Coord C2 exon
chr17:24322149-24323232
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTATTTATTTTCTAGTTG
3' ss Score
9.94
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTGGGGCGGGGCCGCCTACGCGCGTGCGCAGAAAGTCCAGTGCGGTCCAGCGGAGAGCCGAAGGGAGAGGTGCGGTGCGGCGCGCCGAG
Seq A exon
TTGAACTTTCTAGATGCAAGAGAAATCAGAGTGGTGTGAATATTTACCGCAAGTCACTGAAGTGGACCCCTGTGACATTGTTGGACAGTTCTACCATCCAGATCAGAAAG
Seq C2 exon
GGTGTGTGGGATGACAGACTGGTTAACAGAAAACCCCCGAAGCTGGGGCTGCAGGATTTAGCTGCTTTTTGTTCCCTTCCTGGCAGCCTAGGACCTGCCTTGTGGGCACACTGGGCACCATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAGCCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGATGCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTGAGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGATCCTCCTGTGTATTGCCAACCAGTTCCCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGGAGAGGTGCGGT
R:
CTGTAGCTCCGTGCAGTTCAG
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: