BtaEX0000209 @ bosTau6
Exon Skipping
Description
Bos taurus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001046296]
Coordinates
chr25:1981037-1999822:+
Coord C1 exon
chr25:1981037-1981146
Coord A exon
chr25:1997594-1997706
Coord C2 exon
chr25:1998752-1999822
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTTTCTGTTTTCAGATA
3' ss Score
11.86
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCCGCGCGCGCGCGTGCGCAGACGCGCCGGCGCCGGGGCGCGCGGCGAGCTGAGGAGAAAGCTGCGCGGCGGGCGGAGGTGGGCTCGCGGCCGGCGCCGCAGGAGGGTAG
Seq A exon
ATAAATGTTCTTGATGCAAGCAAAACAGGAATGCTCTGATCATTTACCGAAGATCACCGAGGCAAACAAACCTTTGTGAGATCTCCAGACAGTGTACCATCCCAGGCAGAAAG
Seq C2 exon
GGCATGGGATGGCAGACAGGTTAGCCAAGAAGCCTCGGAGAGGGTGCCGGTGGATGTAGCTGCCCTTTGACCCCTCCTGCCCCCGACCCCGGGCACTCCCTGCACGATGCACCCCCCAGCCTACAACTGCTTTGTGGACAGAGACAAGATGGACTCGGCCATCCCGGACCTGGGGCCCAAGGAGCTGAGCTGCACAGAGCTGCAGGAGCTGAAGCAGCTGGCACGCCAGGGCTACTGGGCCCGTAGCTACGCCCTGCGGGGGCAGGTGTACCAACGCCTGATTCGGGACATCCCCTGCCGCACAGTCACCCCCGATGCCAGCGTGTACAGAGACATCGTTGGCAAGATCGTGGGCAAGCACAGTAGCGCCAGCCTGCCCCTGCCCGAGTTTGTGGACAACACGCAGGTGCCCAGCTACTGCCTGAACTCAAAGGGCGAGGGCGCTGTGCGCAAGATCCTGCTGTGCATCAGCAACCAGTTCCCCGACGTGTCCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005458_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGAAAGCTGCGCG
R:
CTGTGCAGCTCAGCTCCTTG
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development