HsaEX0063857 @ hg19
Exon Skipping
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family, member 24 [Source:HGNC Symbol;Acc:29203]
Coordinates
chr16:2525147-2547114:+
Coord C1 exon
chr16:2525147-2525171
Coord A exon
chr16:2543594-2543707
Coord C2 exon
chr16:2546035-2547114
Length
114 bp
Sequences
Splice sites
3' ss Seq
CAGTATTTGCCTTATAATAGGTA
3' ss Score
5.58
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCTGAGGAGAAAGCGGCGCGCGGAG
Seq A exon
GTAGGTGAATGTTCTAGCTGCAAGAGAAACCGGAGTGGTCTGGTCACTCAACCAAAACCTGCTGAAGCAGACCCCTGGGGCACACTGGGAACTTCTACCATCCCAGGTGGAAAG
Seq C2 exon
GGTGTGAGATGGCAGACAGGTTTGCAGGAAACCCTCAGAAAGGGGGCTGGAGGATTTAGCCACTCTGTCCTCCCCTTCCGGCAGTCCAGGGCCTCCTCCCGAGCACAGCGGCGCTATGGACTCTCCAGGATACAACTGCTTCGTGGACAAAGACAAGATGGACGCTGCCATCCAGGACCTGGGGCCCAAGGAGCTGAGCTGCACTGAACTGCAGGAACTGAAGCAGCTGGCGCGCCAGGGCTACTGGGCCCAAAGCCACGCCCTGCGGGGAAAGGTGTACCAGCGCCTGATCCGGGACATTCCCTGCCGCACGGTCACGCCTGACGCCAGCGTGTACAGCGACATCGTGGGCAAGATCGTGGGCAAGCACAGCAGCAGCTGCCTGCCGCTGCCCGAGTTCGTGGACAACACGCAGGTGCCCAGCTACTGCCTGAATGCACGCGGCGAGGGGGCCGTGCGCAAGATCCTCCTGTGCCTGGCCAACCAGTTCCCCGACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=64.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGAAAGCGGCGC
R:
TCAGTTCCTGCAGTTCAGTGC
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)