Special

MmuALTA0018049-2/2 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42340258-42343994:-
Coord C1 exon
chr9:42343629-42343994
Coord A exon
chr9:42340366-42340368
Coord C2 exon
chr9:42340258-42340365
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTCTGTGTTTTCCTTTTTAGCAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
ACAATAGATGTGGTTTTACCTTCTATGGGAGAACTCAGATGGCTGTTTTTGCTTCACTTATTCTGACCAGACCTCTCGCCCCCAGCTGCAACGAGCTACAGTTCTCACAGTATGCAGCCACATGTGACAATGTGCACATCCAGGCCATGCAGGGTGACGGCTACTGCCTGAAACTCACCGACATGAAGGGCTTCTTCCAGCCCTGCTATGGGCTCCTTGATCCCCTCCCGTTCTACGAGTCCTGTTACCTGGATGGCTGCTACAACCACAAGAAGTTCCAGCTGTGTGGCTCCCTGGCTGCCTACGGGGAGGCCTGCCGCTCCTTCGGCATCCTTAGCACCGAGTGGATTGAGAAAGAGAATTGCT
Seq A exon
CAG
Seq C2 exon
GAGTGGTTGAAGACCCTTGTGTGGGGGCGGATTGTCCCAACAGGACCTGCGAGCTGGACAACGGAGGAGAATTATGTGGCTGCATTGAGCCACCCCCCTATGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-19-21,19-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF087426=C8=WD(100=75.0)

							
A:
NA

							
C2:
PF087426=C8=PD(0.1=0.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040262





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000125370
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr11:121165273-121165383 
ALTERNATIVE
HsaALTA0008555-2/2
(TECTA)
Human
(hg19)
chr11:121035982-121036092 
ALTERNATIVE
HsaALTA0008555-2/2
(TECTA)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr15:32332037-32332038 
Chicken
(galGal4)
chr24:3533904-3534014 
GgaALTA1032043-2/2
(TECTA)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr5:62503387-62503494 
DreALTA0029457-2/2
(tecta)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TCCTTAGCACCGAGTGGATTGA

				
R: 
ATTCTCCTCCGTTGTCCAGCT

				
Band lengths: 
108-111

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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