MmuALTA0018049-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42148341-42152077:-
Coord C1 exon
chr9:42151712-42152077
Coord A exon
chr9:42148449-42148451
Coord C2 exon
chr9:42148341-42148448
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TTCTGTGTTTTCCTTTTTAGCAG
3' ss Score
10.61
Exon sequences
Seq C1 exon
ACAATAGATGTGGTTTTACCTTCTATGGGAGAACTCAGATGGCTGTTTTTGCTTCACTTATTCTGACCAGACCTCTCGCCCCCAGCTGCAACGAGCTACAGTTCTCACAGTATGCAGCCACATGTGACAATGTGCACATCCAGGCCATGCAGGGTGACGGCTACTGCCTGAAACTCACCGACATGAAGGGCTTCTTCCAGCCCTGCTATGGGCTCCTTGATCCCCTCCCGTTCTACGAGTCCTGTTACCTGGATGGCTGCTACAACCACAAGAAGTTCCAGCTGTGTGGCTCCCTGGCTGCCTACGGGGAGGCCTGCCGCTCCTTCGGCATCCTTAGCACCGAGTGGATTGAGAAAGAGAATTGCT
Seq A exon
CAG
Seq C2 exon
GAGTGGTTGAAGACCCTTGTGTGGGGGCGGATTGTCCCAACAGGACCTGCGAGCTGGACAACGGAGGAGAATTATGTGGCTGCATTGAGCCACCCCCCTATGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-15-18,15-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=75.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTAGCACCGAGTGGATTGA
R:
ATTCTCCTCCGTTGTCCAGCT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: