Special

MmuALTA0018122-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000007613 | Tgfbr1
Description
transforming growth factor, beta receptor I [Source:MGI Symbol;Acc:MGI:98728]
Coordinates
chr4:47396621-47406361:+
Coord C1 exon
chr4:47396621-47396866
Coord A exon
chr4:47406119-47406130
Coord C2 exon
chr4:47406131-47406361
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGATGTTTATTTCATTGGAGGAC
3' ss Score
0.84
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGATGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAAATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAACATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAG
Seq A exon
GACCTTTTTCAG
Seq C2 exon
AAAAGCAGTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007613-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.052
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0106418=Activin_recp=WD(100=97.6),PF146101=DUF4448=PU(19.0=13.3)

							
A:
NA

							
C2:
PF146101=DUF4448=PD(66.7=53.8),PF085157=TGF_beta_GS=PU(58.6=21.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000007757





     
                   









    
Main Skipping Isoform:
ENSMUSP00000048501





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000103353
          









    
Other Skipping Isoforms:
ENSMUSP00000123761
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:99132495-99132496 
ALTERNATIVE
HsaALTA0008600-2/2
(TGFBR1)
Human
(hg19)
chr9:101894779-101895021 
ALTERNATIVE
HsaALTA0008600-2/2
(TGFBR1)
Rat
(rn6)
chr5:63097044-63097045 
Cow
(bosTau6)
chr8:64605668-64605910 
ALTERNATIVE
BtaALTA0030034-2/2
(TGFBR1)
Chicken
(galGal4)
chr2:56040399-56040641 
HIGH PSI
GgaALTA1010148-2/2
(ChALK5)
Chicken
(galGal3)
chr2:57079960-57079961 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATTGCTGCAATCAGGACCACT

				
R: 
GACTGGACCAGCAATGACAGC

				
Band lengths: 
107-119

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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