MmuALTA0018122-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000007613 | Tgfbr1
Description
transforming growth factor, beta receptor I [Source:MGI Symbol;Acc:MGI:98728]
Coordinates
chr4:47383749-47393489:+
Coord C1 exon
chr4:47383749-47383994
Coord A exon
chr4:47393247-47393258
Coord C2 exon
chr4:47393259-47393489
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGATGTTTATTTCATTGGAGGAC
3' ss Score
0.84
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGATGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAAATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAACATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAG
Seq A exon
GACCTTTTTCAG
Seq C2 exon
AAAAGCAGTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007613-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=97.6)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=21.8)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGCAATCAGGACCACT
R:
GACTGGACCAGCAATGACAGC
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types