MmuINT0159438 @ mm10
Intron Retention
Gene
ENSMUSG00000007613 | Tgfbr1
Description
transforming growth factor, beta receptor I [Source:MGI Symbol;Acc:MGI:98728]
Coordinates
chr4:47383749-47393489:+
Coord C1 exon
chr4:47383749-47383994
Coord A exon
chr4:47383995-47393246
Coord C2 exon
chr4:47393247-47393489
Length
9252 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGATGTTTATTTCATTGGAGGAC
3' ss Score
0.84
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGATGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAAATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAACATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAG
Seq A exon
GTAAGTTGTTGCATTAGCACCCTTCCCTTTCTTCTTCTAAGATGCTAAAAAAAAAAAAAAAAAAAAAAGCTTCTAGACTGCCTACAAATATAGAACTGTAAGTGTTTACAGAGATCATCAAACCTGGCTTGTTGAGAGTAGAGGCAGAGAGTTACCTGTCCACAGTTGTAGATTTATGAGTAGCTAGGAGCCTGACTCCTGGGTGTGTGTTAGAGAAAGCAGTGCCAGGAGACTCTCAGTGAGATCTGCTATGTCTGCAAGGGTAAATTCTAGAATCTCATAGGACAACATGTTGTTAAGGGTTTTCCTTGCCTTGTCCTCAGTGAATTTCTCATTCCTTGTTTAGTGTACGTACATCTTAAGGCAATCTAATCAACAGCCTTTTAATGGGCAGAAATTGAGTGCACCAAACAGTCTAAATGTTTTCATTTTGTAATATTTACCTTTTTATGGTATGTAAATTAATTGTGTATGATGTCTAGTGGCACCATGTATTTAATAGTTTTAAAAAGATTCTAGAAGGCCTGGCGTGGTGACGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTTGAGGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCGAGGGGAAAAAAAGGAAAAAAACCAAACAACCCACCACCAACAAAAAGATCCTAGAAAGGCTACAAAAATGGCTTAGCAGTTAAGAGTGCTTGTGACTCTTTCAGAGAACCCAAGTTCGATTCCCAGCACCCGTGTGGTGGCTCACACTGTGACTCCAGTTCATGGGATCTGATGCCCACTTCTGACCTCAAATCATGGATATGGGTGCACAAACATACATATAGGCAAAAACAACCGTACACATAAAATAATAGATAATAATAAATGGTCCTGGTATAGCTAATAATTTAAAGCTTAATGAATTAAATGGAAATTTGCCACTTTCTCCAAGTCCTGAATTCTTATTTTAATGGTCAAAGGAATATAAAATGGGAGAAAACCTGTATTAATGCTAGCAGATTTGATGGAAGAATGAATACTGCTCACAGGCCAAAACTATGAATAATTTCTGCAGTGTGTGTGTGTGTGTGTGTGTGTACATGCATTCATGTGAGTGCACCTATGTCAGAGAATACTTTGTAGGAGTTGGTTCTCTCCTTTGGTTCCTGAGGATCGAACTGAGTTTATCAGGCTCGGTAATAAGGATCTTTCCACACAAGTCATATTGCTGGCCCAGTATAAGTTTTAAGTATGGTGAAAAGGTCTCAGTGCATTTAACACTGTTTACTAAAAAAGGAGGAAAATGTTCAGATTTTCCACTTTATTCCAGTTTCTGGGCAGTAGAATATTATATATTGGTTATTCTTAAAGTAAGCCTTTTAGAAAGACTTTTTTTTTTAATACAAAGGTAACAGCTGTCTTCAGATAACTAATTAAGTATGCAGTATATAAGGATTTAAAATCCTTCCTGAAAGAATTTTTTAGAAATAGTTTTGTTTGATAAATGAATCTAAATGAAGATGTCAAGAATGAAAAAAGATTATAATATCATACTTTCCCTTCCCATTCCTCTCTCTAAACCCTTTCATACACTCTCTCCAATCCCTATTTTAAATTTGTGGTCTCCTTTTCTTCAATTGTTGACACATTTAGATATGTGTATAAATGTGTTTTTGAAATGAGTAAATATTAATTTATTTAGAGATTATAAGAAAATAAATGTAATTAAAAATGCAATTGGCAGCCGGGACACTTTGGGCTCGAACTTGGTGGACAGTCCTACGGTCCCCAAAGGATTCTCCACCTTCCAGGCGCCCTAGCATACCCAGGTTCTTAGGATTACTGGTGAGTGGAACACAACATCTGTTCCTACAGAACCGGGAGTTCCTGGGGCCAGCAGGAGCAGGGACACAGGAACCCCACCTAACCAGTGGTTCGGGTTCCTTCCATTTGGCACTGGTCTACCTTGATTTCGAACTCAGCAGACAGCCCCACGGTCCCCAGAAGAGGTACCACTTCCAGGTACACACCCAGGATCCTAGGATCCCAGGATCCCAGGGGTTTGGTCATACCAGGATCTCAGGATCTCAGAGGAAGCTTGACTGCCAAGAGCTCTGACACACCCAGAATCTCAGCATCACAGGATTCCAGAATCACAGGATCACAAAGAAAGCTGGACTCTGAGAAGTTCTGACTTAACTGGGATTACAGGAAGGACAGGCTCCAATGAGAGGGAAGGGAGCACTTGAGATAATCAGATGGCGGAGGCAATCATAAGAACAGAAACAACAGAAACCAAGGTTACTTGGCATCATCAGAACCCAATTCTCCCACCACAGCAAGTCCTGGATACACCATCACACCAGAAAAGCAAGATATGGATCTAAAGTCACTTATCATGGTGATGATGGAAGACTATAAGGATATAACTCCCTTAAAGAAATTACAGGAGAATAAAGGTAAGCAGGTAGAAACCCTTAAAGAGGAAACACAAAAATCCCTTAAAGAATTACAGGAAAACACATCCAAACAGGTAAAAGAATTGAACAAAACCATCTAGGATCTAAAAATGGAAGTAGAAACAATAAAGAAATCACAAAGGGAGACAACTCTGGAGATAGAAAACCTAGGAAAGAAGTCAGGAGCCATAGATGTGAACAGAATACAAGAGATAGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAAAACATGGTCACAACAATCAAAGAAAATGCAAAATGCAAAAAAGATCCTAACCCAAAACATCTAGGAAATCCAGGACACAATGAGAAAACCAAACCTAAGGATAATAGGTATAGACAAGAAGGAAGATTTCCAACTTAAAGATAAAGGGCCAGTAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCCAACCGAAAGAAAGATGTTATAAACATACAAGAAGCCTACAGACCTCCAAATAGTTTGGACCAGAGAAGAAATTCCTCCCGTCACTTAATAATCAAAACACCAAATGCACAAAACAAAGAATATTAAAAGCAGTAAGGGAAAAAAGTCAAGTAGCATATAAAGGCAGACCTATCAGAATTACACCTGACTTATCCCCAGAACCTATGAAAGCCAGAAGATCCTGGGCAGATGTCATACACACCCTAAGTAATAAATGACAGCCCAGGCTACTATACCCAGCAAAACTCTCAATTACCATACATGGAGAAACCAAGGTATTCTATGACAAAACCAAATTTACACAATATCTTCCCACAAATCCAGCCCTTCAAAGGATAATAAAGGGAAAACTCCAAAAGAAGGAGGGAAAATACTCTCTAGAAAAAGCAAGAAAGTAATTTTTCAACAAACCTAAAAGAAGATAGCCACATGAATAAAATTTAAACTCTAACAACAAAAATAGCAGGAAGCAACAATGTCTTTTTCTTAATATCTCTTAATATCAAGGGATTCAATTCACCAATAAAAAGACATAGACTAAAAGACTGGTTACGTAAACAGGACCCAACATTTTGCTGCATACAGGAAACCCAACTCAGTGACAAAGACAGAAACTACCTCAGAGTAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTCAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTTCAACCTAAAGTTAGCAAGAAAGATAAGGAGGAACACTTCATACTCATCAAAGGTAAAATTTACCAAGATGAGCTCTCAATTCTGAACATCTATGCTCCAGATGTAAGCGCATCCACATTCATTAAAGAAACTTCAGTAAAGCTCAAAGCACACATTGCACTGCACACAATAATAAAGGGGGACTTCAACACTCCACTCTCATCAATGGATAGATCCTGGAAACAAACTAAACAGAGGCACAGTAAAACTAACAAAAATTATGAAACAAATGGATTTAGCAGATATCTATAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTCAGCACCTCATGGTACCTTCTCCAAAAATGACCATATAATCAGTCATAAAATCGGCCTCAACAGATACAAAAATACTGAAATAATCCCATGCAGCCTATCAGATCACCACAGACTAAGGCTTATCTTCAATAACAACATAAATAATAGAAAGCCCACATACACATGGAAGTTGAACAACACTCTATTCAATGATAACTTGGTCAAGGAAGAAATAAAGAAATTAAAGACTTTTTAGAGTTGAATGAAAATAAAGCCACAACATATCCAAACTTATGGGACACAATGAAAGCAGTCCTAAGAGGAAAACTCATAGCTCTGAGTACCTCCAAAAAGAATCTGGAGAGAGCATATACTAGCAGCTTGAATGACAGAACACCTAAAACCTCTAGAACAAAAGGAAACAAATTCACCCAAGTTAGCAAGAGTGGTAGACTGCAGGAAATAATCAAATTTAGGACTGAAATCAACCAAATAGAAACAAAAACAACTATACAAAGAATCAACCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAAACTAACTAGAGAGCACAGGGACAGTATCTTAATTAACAAAATCAGAAATGAAAAGGGAGTCATAACAGAATCTGAGGAAATTGAAAAAAATCATCAGATCCTACTACAAAAGCCTATGCTCAACAAAAGTGGAAAACCTGGATGAAATGGACAATTTTCTAGATAGATACCAGGTACCAAAGTTAAATCAGGATCAGATTTAATGATCTAAACAGTCCCATATCCCTGAAAGAAATAGAAAGTCATTAATAGTTTCCCAACCAAAAAAAGTCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAGGACCTAATTTCAATACTCTTCGAACTATTCCACAAAATAGAAACAAAAGGTACTCTACCCAGTTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGACCCAACAAAGAAAGAGAACTTCAGACCAATTTCCCTTATGAAAATCGATGCAAAATTACTCAGTAAAATTCTCGATAACCAAATCCATGAACACATCAAAACAGTTATCCATCATGATCAAGTAGGCTTCATTCCCAGGGATACAGAGATGGTTCAATATACAGAAATCTATCAACGTAATCCACTATATAAACAAACTCAAAGACAAAAAACACATGACCATCTCATTAGATGATGAGAAAGCATTTGAAAAAAATCCAATACCCTTCATGATAAAAGTATTGGAAAGATTAGGAATTCAAGGCCCATACCTAAACATAATAAAAGCAATATACAGCAAACCAGTAGCCAACATCAAACTAAATGAAGAAAGTTGAAGCAATCCCACTAAAATCAGGGATAAGATAAGGCTGCCCACTTTCCTTCTACCTATTCCATATAGTACTTGAAGTCCGAGCCAGAGCAATTAGACAACAAAAGGAGATCAAAGAGATACAAATTGGAAAGGAAGATGTCAAAATACTACTATTGCAGACAATATGATCATATATAGAAGTGACCCCAAAAGTTCCACCAGAGAACTCCTAAACCTGATAAACAACTTCAGCAAAATAGATGGATATAAAATTAACTCAAAAAATTAGTGACCTTTTTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTGGGGAAACAACACCCTTCACAGTAGTCACAAATAATATAAAATGCCTTGGTGTGACTCTAACTAAAGAAGTGAAAGATCTGTATGATAGGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAAATGGAAAGGTCTCTGATGCTCATGGATTGGCAGGATTCATATAGTCAAAATGGCTATCTTGCTGAAAGCAATCTACAGATTCAATGTAATCCCCATCAAAATTCCAACTCAACTGAGTTAGAAAGGGCAATTTGCAAAATTATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTACTCTCAACAATAAAAGAACCTCTGGTGGAATCATCATCCCCGGCTTCAAGCCGTGCTACAGAGCAATTTTGATAAAAACTGAATGGTACTGGTACAGTGACAGACAGGTAGATCAATGGAATAGAATTGATGACCCAGAAATGAACCCACATACCTATGGTCACTTGATCTTTTATAAAGGAGCTAAAATTATCCAGTGGAAAGAAGACAGTATTTTCAACAAATGGCGTTGGCTCAGGTGGTAGTTAGCATGTAGAAGAATGCACATTGATCCATTCTTATCTCCTTGTACAAAACTCAAGTCTAAGTGGATCAAGGAACTCCACATAAGACCAGAAAGAGTGAAACTTACAGAGGAGAAAGTGGGGAAGAGCCTCGAAGATATGGGCTCAGGGGGAAAATTCCTGAACAGAACACCAATGACTTATGCTGTAAGATCAAGTATCAATAAATAGGACCTCATAAAATTGCAAAGCTTTTGTAAGGCAAAGGACATTCTCAGTAAGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAACCCTAAATCTGATAGGGGGGCTAATATCCTATATATATATATATATATATATATATATATATATATATATATATATATATATGTATACACATACATATACACACACACATATATACACATATATATATATGTGTGTGTGTATGTATGTATATATATATACACACATACATACACACACATACGTATATATATACACACACATACATACACACATACGTGTATATATATACACACATACATACATACACACACATACATACACACACATACGTATATATACACACACACATATACATACATATATATATATATATATGTATATATATATATATATATATACATATATATATATATATATGTATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATATATATATATATACATATATATATAAAGAACTCAAGAAGTTGGACTCCAGAAAACCAAATAACCCTATTAAAAAATAGGGTACAGAACTAAACAAAGAATTCTCAACTGAGGAATACCAAATGGTTGAGAAGCACCTAAAAAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAAAAAGAGGAATACTCCTCCATTGCTAGTAGGATTGCAAGCTGGTACAACTACGCTGGAAATCATTTTGGTGGTTCCTCGGAAAATTGGACATAGTACTTCCAGAAGATCCAACAATACCACTCCTGGGCATGTACGCAGAAGATGCTCCATCTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCAAGAAGCTGGAAAGAACCCAGATGCCCCTCAGCAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTTAGTACTCAGCTATTAAAAACAATTCATGAAATTCTTAGTCAGATGGATGTGTCTGGAGGATATCATCCTAAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATACCCAATATACAATTTGCAAAACACATGAAACTCAAAAAGAAGGAAGACCAAAGTGTGGATACTTCAATCCTTCGGGGGAACAAAATTCCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCAGAGACTGAAGGAATGACCATCTAGAAACTGCCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCAGATACTATTGCAGATGCCAGCAAGAGCTTGCTGACAGGAACCTGTTATAGCATCTCTTGAGAGGCTCTGCCAGTGCCTGACTAATACAGAAGTGGATGCTCACAGTCATCTGTTGGACGGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTTCCCAAGGAGCTGAAGAGGTTTTCAGCCCCATAGGAGGAACAACAATATGAATTAACCAGTACTCCTAGATCTCCCTGGGACTAAACCACCAATCAAAGAAAATACATGGTGGGACTCATGGCTTTAGCTGCATATGTAGCAGAGAACGGCCTAGTCAGTCATCAGTGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGGAAGCAGGGGGAGGAGGGAGAGGATAGGGGATTTTCAGAGAGGAAAGTAGGAAAGGGGATAACATTTGAAATGTACGTAAAGTACCTAATAAAAAAATACAGTTGGCAAAATAGTCTAGAAAGGATGTGCATACACAATGTATTAATATCCAGTGCTGGAATGCAGAGGTTGAAGAATCCCAAATTTGAGACCAGCCTGGATGAACTATGGTGATAAAACCCCGTCTCACAAAAAATTGAGGGAAAGAGTTAAAAATTTATAAATAAGCAAATAGAATAAAAAACAAAAGTAAACAAAGGAAGTCTTAGGCTTTAAAAAGTTGGTGGAAGGGCTGGTGTGATGGCTCAGTGGGTAAGAGTACCCGACTGCTCTTCCAAAGGTCCAGTGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTTAAAAAAAATAGTTGGTGGAAAAGTATATAATAAAATATGAGTCTGAAGCTTTGCAAGGAAGTTGATAATTTGTAAAAACTTTATTAACTATATTTATATATATTTCTTCTGCTATAATCCTGCAGTAAACTTGGAATAAGAAGAAAAGACCAAAGTGCTTTATAAAAAAATGAGTTATTAGAAGTTGTTTCAAATAATTGTTTACTTTTCTTGTTTACCTGAGGTGACAAGTGGGGAAGGAGGTCTAGAAGGGGCTTAGCTAATGAACCCAATGGTGAACTATAAGATAGGCTGGGGATACTCAGGAAGAGTGAGAGGGTACTGACAGCTGATGGTCTGACAAAGGAGACCAGGGAGGGAAGCCCTGTGTGACTAAATGATAGTAGTGGACACGGGGGTGGGGGTGGAGGGATATGGAGGGTTTGGGAACTGTGAGTGCCACCTACAGTGTTTTGTTTCTCTTGATGTTTATTTCATTGGAG
Seq C2 exon
GACCTTTTTCAGAAAAGCAGTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007613:ENSMUST00000007757:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=97.6)
A:
NA
C2:
PF146101=DUF4448=PD(68.7=56.1),PF085157=TGF_beta_GS=PU(58.6=20.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types