BtaINT0147558 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018035 | TGFBR1
Description
Bos taurus transforming growth factor, beta receptor 1 (TGFBR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174621]
Coordinates
chr8:64601896-64605910:+
Coord C1 exon
chr8:64601896-64602141
Coord A exon
chr8:64602142-64605679
Coord C2 exon
chr8:64605680-64605910
Length
3538 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CATTTGAGGCCCTTTTACAGGAA
3' ss Score
4.14
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTTTGTACAAAAGACAATTTTACTTGTGTCACAGATGGGCTTTGCTTTGTCTCTGTCACAGAGACCACAGACAAAGTTATACATAATAGCATGTGTATAGCTGAAATTGACCTAATTCCACGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACTGGGTCTATAACTACAACATATTGCTGCAACCAGGACCACTGCAATAAAATAGAACTTCCAACTGTTG
Seq A exon
GTAAGTTGTATGAGACTTTTTTCTTGATACTATAAGGAAAGCTCTTAGACTATCCCAGTTTATTCAGTTTAGAGGCAAAAAGTAACTAGTCCATGCTAGTAGAGTCATAAGAGTAGCCAAAATTCTTACTCCTGGGTGTATGTTGCTTGAGAAGGTGGTACCAAGACAGACTTTCTCTGAGGTCTGTTGTGCCTAAAAGGGTAGGCACCTGTAGAGAATCCTGATACAGGCCACCATAGCAGTATATCCTGAGAGTGTCCCTGCTTGTATAATGCTCCAGCTTTTGAAAGCAGTCAGTAATGGAGGGGGAATGGAGAGCAATACTCAACAATCCAGACGCCTTCACTTTGTAATTTCACCTTGCTTTATGATCTTTATGTATAAACTATTACATATGATTTCTAGGTTTTTGGTTCTTCACCATAGTTTACATTTTAAAATGTCCTAGGACCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGAGGTCTCTAAGAGTCGGATACGACTGAGCGACTTCACTTTCACTTTTCACGTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACACGACTGAAGCCACTTGGCGGCAGCAGCAGGAGAGCCAGAAATTTGAAAACTTCATAAACAGGATTAGGTTAAAGATTCTGGTTAAAGATATTGGTCTGAGCTCATGTATTTAACTCTGCTGTCACTTTTCCCTGGTGGGCTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAGTGTGGGATTCCCAGATTCGATCCCTGGGTTGAGATCTCCTGGAGAAGGAACTGGCAACCCACTCCAGTCTTCGGGCTTGGAGAATCCCATGGACAGAGGAGCCTGGCAGACCTTGAGGTCACAAGGAATCAGACCTGACTGAGTGACTACATGATGTGATGTGATGATCTGTCACTTTTCCCAAGTACCTACTATAATAAAGGAGTACAAAAATGAGGAAAAGCTATATTAATGCTAGGAGAATTAATGGAAGAAGTGCCACCTACATGCATTTAGAGTTGTCAAACTCTGCAGTTTATAATGCAGATGATAATCGTCTAGTGAAGAATTGACTAACTATAGGAAAAGAAGTAGGTGAAAGAACTTCTTGCAGAATCCCACCAATACTTTAAGCTGAGAGGCTGGGCGTGAGACTAGGCTACAGGGGCAGATTCTTTTCTCTCTTTTTTTAAAAAATATAAATTTATTTAATTGGAGGCTAGTTACTTTACAATATTGTATTGGTTTTGCCATACATTGACATCAATCTGCCACGGGTGTACATGTGTTCCCTATCCTGAAACCCCTTCCCACGTCCCTCCCCATCCCATCCTTCTGGGTCATCCCAGTGCACCAGCCCCGAGCACCCTGAATCACGCATCACACCTGGACTGGCGATTCGTTTCACATATGATAATATACGTTTCAATGCCATTCTCCCAGGGGCAGACTCTCAATTCTCCTTTAGGAAGCACGGCTTTCATTGCTCAGAGGTACAGACCCCAGTGCTCAGTTTCCACTCAGAGCTGGTCTAGGCATCATACTAGTTAAAGTAGAAAACACTGCTGGAGCTCAGAATAAAAGGGCCAGTCCTGCCAGTTACAGAAGGCAGGCAGTCTTCTACCTAGTTCACGTGATGACAGCAAAGTAAAACCAGATCTTCAACATAAAGAAGGTCCTTGTGGCAGAGCTCTGTCAGACTTTTCTATAGTTACTTGCAATTCTAATATGACGAAGAGAAGAATAATTTCGGAATTTCCCATTTTTGTTGTTTGAAATGGTTTGAAATATCAGAGTGGAGACTCACAAAACCTTATGAAGAACTTACTTTATTTCTAATGCTAAAATACACAGATCCCTCATTCCCAGGCCCCAGATAATCAGACAGCAAATAATTTTACCAAATGGAAAGATTCCGTGGTTCAAAAGAAGTGAACTGAACTGGATAAATGAGAGTAGACGTCATCCTATGAAACAGACTTAGCACATGATAGGGAAGAACTTCCAGAGTCCAAGGTCTGTTGTCAGCTGTTGACAGTGAAATGAGAACATTTCACAGTTGTTAAAGATCGCTTTCAGATGAAAAGCTCAATTGATAAATTATTTTAAAAAATGCAGTATTGAAAGTGAACAGCAGACTGGATACTATAATTTTATAATCAAGTGTGAGACAAGCTTAAGGCAAGACAAGCTTGAGAAACTGTTACAATTCAGAAAAAAGACAGTTGGTGAGCAAATTAAGAGATACAGAGGACAGATCTAGGTGATCCAATGTGCTTACTGTAAAACCAGAAAAAGGCAAAAGGATGGACAGAAGAGAGAAGAATACTATGTAAAATTAATGAAGAATTACTTAACCAAATATATATAATGAAAAACCCATCAGTTTTCAAGAATAAAAGAAAACTGTGTACACATGCAGCACAAGTGAACACTGGTTACGTATAAAAGGAAAAAGTTCAAATAATTTTGCTTTTTTAAAAAAATACCAGAAGGCAATGAAATATCATATATTGCTTGTTACCCAAAATTCTTTAGATGAGCCAAGATTTTTCATATGTAAAGGCAGCAGCTAACTTTAGATAATCAACTATTCAGTGTGTATGCACTCATGTACTCCTGAACGATAGGATTCGTTCTAAGAAATCAGTCCACTAAAGATCTCAATATGATAAAGATGTGATATGAAGGAAATGGTAGTGGGCCATGAACCAGCAAGTGTCAGAATGAATGCCTAAATAGTTATAATTAATGTGTTTCTGAAGCAATGCAAATTGTTTATTAAATTATAAAAAAAATGATCTTGAATTAAAAGGCTCAGTGATTAAAATAAACTGGAAAGTATACATGTGCAAACTCTATTAAAAAAAACAGGGTATATTTTTGCATGGACAAAAAATTGGTGGAGGTATACAGATACACAGAACATGCAGATGAATTTTAGGGGGATTGTGAGGCTATAGATAAATTTAACTTTTCCTCATCTGTATTTATACTTCTTAATTTTTTTTCTTGCTATGAGCATATACTGGCCTTGGAATAAGAAGATAAGCCAAACTGCTTTTTTAAGAAAAGAAAAGACCAGTGACTCAAGAAATATTTAATGAGAGTTGTTCCAGATTATTGGTTCTTTTATTAGTAATCTGAGAGTGATGGGAGGTGGAGAGTGGGTGTACAATGTTTGTAGTACCTGGCCTTGTTATTTAGGCTCAAGACTACAGGAAGACTAAGTGGATGTTGACAGAGCTAGTGACCATAAAAGGAGAGCCAGTGGGAGAAGATGAAGTGCTTCACTTGTTATGGGTTTGAGCTCCATGAACTGCTGTAATGAGGCTGTGACTAATGGTAGTGACCAACTGCAGGAAATGGGAGGATTAGGAAACTGTGGATGCCGCCTATAGTGTTATTGTTGTTGTTTATTTCATTTGAGGCCCTTTTACAG
Seq C2 exon
GAAAGCCATCATCTGGCCTTGGTCCTGTTGAACTGGCAGCTGTCATTGCTGGACCAGTCTGCTTTGTCTGTATCTCACTCATGTTGATGGTCTATATTTGCCATAACCGCACTGTCATTCACCATCGAGTGCCAAATGAAGAGGATCCCTCGTTAGATCGCCCTTTTATTTCAGAGGGTACAACGTTAAAAGATTTAATTTACGACATGACAACATCAGGTTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018035:ENSBTAT00000024010:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=97.6)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=21.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]