MmuINT0159438 @ mm9
Intron Retention
Gene
ENSMUSG00000007613 | Tgfbr1
Description
transforming growth factor, beta receptor I [Source:MGI Symbol;Acc:MGI:98728]
Coordinates
chr4:47396621-47406361:+
Coord C1 exon
chr4:47396621-47396866
Coord A exon
chr4:47396867-47406118
Coord C2 exon
chr4:47406119-47406361
Length
9252 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGATGTTTATTTCATTGGAGGAC
3' ss Score
0.84
Exon sequences
Seq C1 exon
CATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGATGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAAATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAACATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAG
Seq A exon
GTAAGTTGTTGCATTAGCACCCTTCCCTTTCTTCTTCTAAGATGCTAAAAAAAAAAAAAAAAAAAAAAGCTTCTAGACTGCCTACAAATATAGAACTGTAAGTGTTTACAGAGATCATCAAACCTGGCTTGTTGAGAGTAGAGGCAGAGAGTTACCTGTCCACAGTTGTAGATTTATGAGTAGCTAGGAGCCTGACTCCTGGGTGTGTGTTAGAGAAAGCAGTGCCAGGAGACTCTCAGTGAGATCTGCTATGTCTGCAAGGGTAAATTCTAGAATCTCATAGGACAACATGTTGTTAAGGGTTTTCCTTGCCTTGTCCTCAGTGAATTTCTCATTCCTTGTTTAGTGTACGTACATCTTAAGGCAATCTAATCAACAGCCTTTTAATGGGCAGAAATTGAGTGCACCAAACAGTCTAAATGTTTTCATTTTGTAATATTTACCTTTTTATGGTATGTAAATTAATTGTGTATGATGTCTAGTGGCACCATGTATTTAATAGTTTTAAAAAGATTCTAGAAGGCCTGGCGTGGTGACGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTTGAGGCCAGCCTGGACTACAGAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCGAGGGGAAAAAAAGGAAAAAAACCAAACAACCCACCACCAACAAAAAGATCCTAGAAAGGCTACAAAAATGGCTTAGCAGTTAAGAGTGCTTGTGACTCTTTCAGAGAACCCAAGTTCGATTCCCAGCACCCGTGTGGTGGCTCACACTGTGACTCCAGTTCATGGGATCTGATGCCCACTTCTGACCTCAAATCATGGATATGGGTGCACAAACATACATATAGGCAAAAACAACCGTACACATAAAATAATAGATAATAATAAATGGTCCTGGTATAGCTAATAATTTAAAGCTTAATGAATTAAATGGAAATTTGCCACTTTCTCCAAGTCCTGAATTCTTATTTTAATGGTCAAAGGAATATAAAATGGGAGAAAACCTGTATTAATGCTAGCAGATTTGATGGAAGAATGAATACTGCTCACAGGCCAAAACTATGAATAATTTCTGCAGTGTGTGTGTGTGTGTGTGTGTGTACATGCATTCATGTGAGTGCACCTATGTCAGAGAATACTTTGTAGGAGTTGGTTCTCTCCTTTGGTTCCTGAGGATCGAACTGAGTTTATCAGGCTCGGTAATAAGGATCTTTCCACACAAGTCATATTGCTGGCCCAGTATAAGTTTTAAGTATGGTGAAAAGGTCTCAGTGCATTTAACACTGTTTACTAAAAAAGGAGGAAAATGTTCAGATTTTCCACTTTATTCCAGTTTCTGGGCAGTAGAATATTATATATTGGTTATTCTTAAAGTAAGCCTTTTAGAAAGACTTTTTTTTTTAATACAAAGGTAACAGCTGTCTTCAGATAACTAATTAAGTATGCAGTATATAAGGATTTAAAATCCTTCCTGAAAGAATTTTTTAGAAATAGTTTTGTTTGATAAATGAATCTAAATGAAGATGTCAAGAATGAAAAAAGATTATAATATCATACTTTCCCTTCCCATTCCTCTCTCTAAACCCTTTCATACACTCTCTCCAATCCCTATTTTAAATTTGTGGTCTCCTTTTCTTCAATTGTTGACACATTTAGATATGTGTATAAATGTGTTTTTGAAATGAGTAAATATTAATTTATTTAGAGATTATAAGAAAATAAATGTAATTAAAAATGCAATTGGCAGCCGGGACACTTTGGGCTCGAACTTGGTGGACAGTCCTACGGTCCCCAAAGGATTCTCCACCTTCCAGGCGCCCTAGCATACCCAGGTTCTTAGGATTACTGGTGAGTGGAACACAACATCTGTTCCTACAGAACCGGGAGTTCCTGGGGCCAGCAGGAGCAGGGACACAGGAACCCCACCTAACCAGTGGTTCGGGTTCCTTCCATTTGGCACTGGTCTACCTTGATTTCGAACTCAGCAGACAGCCCCACGGTCCCCAGAAGAGGTACCACTTCCAGGTACACACCCAGGATCCTAGGATCCCAGGATCCCAGGGGTTTGGTCATACCAGGATCTCAGGATCTCAGAGGAAGCTTGACTGCCAAGAGCTCTGACACACCCAGAATCTCAGCATCACAGGATTCCAGAATCACAGGATCACAAAGAAAGCTGGACTCTGAGAAGTTCTGACTTAACTGGGATTACAGGAAGGACAGGCTCCAATGAGAGGGAAGGGAGCACTTGAGATAATCAGATGGCGGAGGCAATCATAAGAACAGAAACAACAGAAACCAAGGTTACTTGGCATCATCAGAACCCAATTCTCCCACCACAGCAAGTCCTGGATACACCATCACACCAGAAAAGCAAGATATGGATCTAAAGTCACTTATCATGGTGATGATGGAAGACTATAAGGATATAACTCCCTTAAAGAAATTACAGGAGAATAAAGGTAAGCAGGTAGAAACCCTTAAAGAGGAAACACAAAAATCCCTTAAAGAATTACAGGAAAACACATCCAAACAGGTAAAAGAATTGAACAAAACCATCTAGGATCTAAAAATGGAAGTAGAAACAATAAAGAAATCACAAAGGGAGACAACTCTGGAGATAGAAAACCTAGGAAAGAAGTCAGGAGCCATAGATGTGAACAGAATACAAGAGATAGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAAAACATGGTCACAACAATCAAAGAAAATGCAAAATGCAAAAAAGATCCTAACCCAAAACATCTAGGAAATCCAGGACACAATGAGAAAACCAAACCTAAGGATAATAGGTATAGACAAGAAGGAAGATTTCCAACTTAAAGATAAAGGGCCAGTAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCCAACCGAAAGAAAGATGTTATAAACATACAAGAAGCCTACAGACCTCCAAATAGTTTGGACCAGAGAAGAAATTCCTCCCGTCACTTAATAATCAAAACACCAAATGCACAAAACAAAGAATATTAAAAGCAGTAAGGGAAAAAAGTCAAGTAGCATATAAAGGCAGACCTATCAGAATTACACCTGACTTATCCCCAGAACCTATGAAAGCCAGAAGATCCTGGGCAGATGTCATACACACCCTAAGTAATAAATGACAGCCCAGGCTACTATACCCAGCAAAACTCTCAATTACCATACATGGAGAAACCAAGGTATTCTATGACAAAACCAAATTTACACAATATCTTCCCACAAATCCAGCCCTTCAAAGGATAATAAAGGGAAAACTCCAAAAGAAGGAGGGAAAATACTCTCTAGAAAAAGCAAGAAAGTAATTTTTCAACAAACCTAAAAGAAGATAGCCACATGAATAAAATTTAAACTCTAACAACAAAAATAGCAGGAAGCAACAATGTCTTTTTCTTAATATCTCTTAATATCAAGGGATTCAATTCACCAATAAAAAGACATAGACTAAAAGACTGGTTACGTAAACAGGACCCAACATTTTGCTGCATACAGGAAACCCAACTCAGTGACAAAGACAGAAACTACCTCAGAGTAAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTCAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTTCAACCTAAAGTTAGCAAGAAAGATAAGGAGGAACACTTCATACTCATCAAAGGTAAAATTTACCAAGATGAGCTCTCAATTCTGAACATCTATGCTCCAGATGTAAGCGCATCCACATTCATTAAAGAAACTTCAGTAAAGCTCAAAGCACACATTGCACTGCACACAATAATAAAGGGGGACTTCAACACTCCACTCTCATCAATGGATAGATCCTGGAAACAAACTAAACAGAGGCACAGTAAAACTAACAAAAATTATGAAACAAATGGATTTAGCAGATATCTATAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTCAGCACCTCATGGTACCTTCTCCAAAAATGACCATATAATCAGTCATAAAATCGGCCTCAACAGATACAAAAATACTGAAATAATCCCATGCAGCCTATCAGATCACCACAGACTAAGGCTTATCTTCAATAACAACATAAATAATAGAAAGCCCACATACACATGGAAGTTGAACAACACTCTATTCAATGATAACTTGGTCAAGGAAGAAATAAAGAAATTAAAGACTTTTTAGAGTTGAATGAAAATAAAGCCACAACATATCCAAACTTATGGGACACAATGAAAGCAGTCCTAAGAGGAAAACTCATAGCTCTGAGTACCTCCAAAAAGAATCTGGAGAGAGCATATACTAGCAGCTTGAATGACAGAACACCTAAAACCTCTAGAACAAAAGGAAACAAATTCACCCAAGTTAGCAAGAGTGGTAGACTGCAGGAAATAATCAAATTTAGGACTGAAATCAACCAAATAGAAACAAAAACAACTATACAAAGAATCAACCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAAACTAACTAGAGAGCACAGGGACAGTATCTTAATTAACAAAATCAGAAATGAAAAGGGAGTCATAACAGAATCTGAGGAAATTGAAAAAAATCATCAGATCCTACTACAAAAGCCTATGCTCAACAAAAGTGGAAAACCTGGATGAAATGGACAATTTTCTAGATAGATACCAGGTACCAAAGTTAAATCAGGATCAGATTTAATGATCTAAACAGTCCCATATCCCTGAAAGAAATAGAAAGTCATTAATAGTTTCCCAACCAAAAAAAGTCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAGGACCTAATTTCAATACTCTTCGAACTATTCCACAAAATAGAAACAAAAGGTACTCTACCCAGTTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGACCCAACAAAGAAAGAGAACTTCAGACCAATTTCCCTTATGAAAATCGATGCAAAATTACTCAGTAAAATTCTCGATAACCAAATCCATGAACACATCAAAACAGTTATCCATCATGATCAAGTAGGCTTCATTCCCAGGGATACAGAGATGGTTCAATATACAGAAATCTATCAACGTAATCCACTATATAAACAAACTCAAAGACAAAAAACACATGACCATCTCATTAGATGATGAGAAAGCATTTGAAAAAAATCCAATACCCTTCATGATAAAAGTATTGGAAAGATTAGGAATTCAAGGCCCATACCTAAACATAATAAAAGCAATATACAGCAAACCAGTAGCCAACATCAAACTAAATGAAGAAAGTTGAAGCAATCCCACTAAAATCAGGGATAAGATAAGGCTGCCCACTTTCCTTCTACCTATTCCATATAGTACTTGAAGTCCGAGCCAGAGCAATTAGACAACAAAAGGAGATCAAAGAGATACAAATTGGAAAGGAAGATGTCAAAATACTACTATTGCAGACAATATGATCATATATAGAAGTGACCCCAAAAGTTCCACCAGAGAACTCCTAAACCTGATAAACAACTTCAGCAAAATAGATGGATATAAAATTAACTCAAAAAATTAGTGACCTTTTTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTGGGGAAACAACACCCTTCACAGTAGTCACAAATAATATAAAATGCCTTGGTGTGACTCTAACTAAAGAAGTGAAAGATCTGTATGATAGGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAAATGGAAAGGTCTCTGATGCTCATGGATTGGCAGGATTCATATAGTCAAAATGGCTATCTTGCTGAAAGCAATCTACAGATTCAATGTAATCCCCATCAAAATTCCAACTCAACTGAGTTAGAAAGGGCAATTTGCAAAATTATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTACTCTCAACAATAAAAGAACCTCTGGTGGAATCATCATCCCCGGCTTCAAGCCGTGCTACAGAGCAATTTTGATAAAAACTGAATGGTACTGGTACAGTGACAGACAGGTAGATCAATGGAATAGAATTGATGACCCAGAAATGAACCCACATACCTATGGTCACTTGATCTTTTATAAAGGAGCTAAAATTATCCAGTGGAAAGAAGACAGTATTTTCAACAAATGGCGTTGGCTCAGGTGGTAGTTAGCATGTAGAAGAATGCACATTGATCCATTCTTATCTCCTTGTACAAAACTCAAGTCTAAGTGGATCAAGGAACTCCACATAAGACCAGAAAGAGTGAAACTTACAGAGGAGAAAGTGGGGAAGAGCCTCGAAGATATGGGCTCAGGGGGAAAATTCCTGAACAGAACACCAATGACTTATGCTGTAAGATCAAGTATCAATAAATAGGACCTCATAAAATTGCAAAGCTTTTGTAAGGCAAAGGACATTCTCAGTAAGACAAAACGGCAACCAACAGATTGGGAAAAGATCTTTACCAACCCTAAATCTGATAGGGGGGCTAATATCCTATATATATATATATATATATATATATATATATATATATATATATATATATATGTATACACATACATATACACACACACATATATACACATATATATATATGTGTGTGTGTATGTATGTATATATATATACACACATACATACACACACATACGTATATATATACACACACATACATACACACATACGTGTATATATATACACACATACATACATACACACACATACATACACACACATACGTATATATACACACACACATATACATACATATATATATATATATATGTATATATATATATATATATATACATATATATATATATATATGTATATATATATATATATATATATATATATATATATATATATGTATATATATATATATATATATATATATATATACATATATATATAAAGAACTCAAGAAGTTGGACTCCAGAAAACCAAATAACCCTATTAAAAAATAGGGTACAGAACTAAACAAAGAATTCTCAACTGAGGAATACCAAATGGTTGAGAAGCACCTAAAAAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAAAAAGAGGAATACTCCTCCATTGCTAGTAGGATTGCAAGCTGGTACAACTACGCTGGAAATCATTTTGGTGGTTCCTCGGAAAATTGGACATAGTACTTCCAGAAGATCCAACAATACCACTCCTGGGCATGTACGCAGAAGATGCTCCATCTTGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCAAGAAGCTGGAAAGAACCCAGATGCCCCTCAGCAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTTAGTACTCAGCTATTAAAAACAATTCATGAAATTCTTAGTCAGATGGATGTGTCTGGAGGATATCATCCTAAGTGAGGTAACCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATACCCAATATACAATTTGCAAAACACATGAAACTCAAAAAGAAGGAAGACCAAAGTGTGGATACTTCAATCCTTCGGGGGAACAAAATTCCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCAGAGACTGAAGGAATGACCATCTAGAAACTGCCCCACCTGGGGATCCATCCCATAAACAACCACCAAACCCAGATACTATTGCAGATGCCAGCAAGAGCTTGCTGACAGGAACCTGTTATAGCATCTCTTGAGAGGCTCTGCCAGTGCCTGACTAATACAGAAGTGGATGCTCACAGTCATCTGTTGGACGGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGTTCCCAAGGAGCTGAAGAGGTTTTCAGCCCCATAGGAGGAACAACAATATGAATTAACCAGTACTCCTAGATCTCCCTGGGACTAAACCACCAATCAAAGAAAATACATGGTGGGACTCATGGCTTTAGCTGCATATGTAGCAGAGAACGGCCTAGTCAGTCATCAGTGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGGAAGCAGGGGGAGGAGGGAGAGGATAGGGGATTTTCAGAGAGGAAAGTAGGAAAGGGGATAACATTTGAAATGTACGTAAAGTACCTAATAAAAAAATACAGTTGGCAAAATAGTCTAGAAAGGATGTGCATACACAATGTATTAATATCCAGTGCTGGAATGCAGAGGTTGAAGAATCCCAAATTTGAGACCAGCCTGGATGAACTATGGTGATAAAACCCCGTCTCACAAAAAATTGAGGGAAAGAGTTAAAAATTTATAAATAAGCAAATAGAATAAAAAACAAAAGTAAACAAAGGAAGTCTTAGGCTTTAAAAAGTTGGTGGAAGGGCTGGTGTGATGGCTCAGTGGGTAAGAGTACCCGACTGCTCTTCCAAAGGTCCAGTGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATGAATAAATAAATCTTAAAAAAAATAGTTGGTGGAAAAGTATATAATAAAATATGAGTCTGAAGCTTTGCAAGGAAGTTGATAATTTGTAAAAACTTTATTAACTATATTTATATATATTTCTTCTGCTATAATCCTGCAGTAAACTTGGAATAAGAAGAAAAGACCAAAGTGCTTTATAAAAAAATGAGTTATTAGAAGTTGTTTCAAATAATTGTTTACTTTTCTTGTTTACCTGAGGTGACAAGTGGGGAAGGAGGTCTAGAAGGGGCTTAGCTAATGAACCCAATGGTGAACTATAAGATAGGCTGGGGATACTCAGGAAGAGTGAGAGGGTACTGACAGCTGATGGTCTGACAAAGGAGACCAGGGAGGGAAGCCCTGTGTGACTAAATGATAGTAGTGGACACGGGGGTGGGGGTGGAGGGATATGGAGGGTTTGGGAACTGTGAGTGCCACCTACAGTGTTTTGTTTCTCTTGATGTTTATTTCATTGGAG
Seq C2 exon
GACCTTTTTCAGAAAAGCAGTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007613-Tgfbr1:NM_009370:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=97.6),PF146101=DUF4448=PU(19.0=13.3)
A:
NA
C2:
PF146101=DUF4448=PD(79.3=56.1),PF085157=TGF_beta_GS=PU(58.6=20.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: