DreINT0162541 @ danRer10
Intron Retention
Gene
ENSDARG00000042259 | tgfbr1b
Description
transforming growth factor, beta receptor 1 b [Source:ZFIN;Acc:ZDB-GENE-091027-1]
Coordinates
chr24:409182-411935:+
Coord C1 exon
chr24:409182-409427
Coord A exon
chr24:409428-411698
Coord C2 exon
chr24:411699-411935
Length
2271 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GGTTCTGTTTGTGTGTGTAGTGC
3' ss Score
5.44
Exon sequences
Seq C1 exon
GTCTACAGTGCTACTGCCACCGCTGCCCGAACCACACGTGTACGACGGACGGGCTGTGTTACGTGTCCATCACCCGCGCGGGCAGCTTGACCACACAGCAGAGCTGGTGCATCGGTAAGGGGGAGCTGGTCCCGCCCGACCGCCCCTTCGTCTGCGCACCGTCCACTAAAGACAACAGCGGCATCTATCCGCTCTGCTGCGACACCGACTGGTGCAACAAGGACCCCGACATCAAAGCATTCCCAG
Seq A exon
GTACACTATCAATACTTTAGGCCAGGGCTATCAGTGCGTTAGGGCAGGACAATTGGTGCTTCAGGGGGGGACTATTGGTACTTTAGAGCGGGACTGTCAGTGCTTTAAGGCGGGGCTGTTGGTGCTTAGGGCGGAAATTTCAGTTGTTTAGGGTGGGACTATTGGTACTTAAGGGCGAGACTATCTGTGCTTTAGGGTGCGATTACTGGTACTTCAGGGCGGGACTATCAGTGCTTTAGGGCGGGGCTATCAGTTCTTTAGGATGTGACTGGCAGTGCTTTAGGGTGGGGCTATCAGTTCTTTAGGGCGTGACTGTCAGTGCTTTAGGGCGGGGCTATCAGTTCTTTAGGATGCTTTAGGGCGGGGCTATCAATTCTTTAGTATGTGACTGTCAGTGCTTTAAGGCGGGGCTATCAGTTCTTTAGGATGTGACTGTCAGTGCTTTAGGGCGGGGCTATCAGTCTTTCAGGGTGTGACTGTAAGTGCTTTAGGGCGGGGCTATCAGTTCTTTAGGGTGTGACTGTAAGTGCTTCAGGGCGGGGCTATCAGTGCTTTAGGGTGTGACTGTCAGTGCTTTAGGGCGGGGCTATCAGTGCTTTAGGGTGTGACTGTCAGTGCTTTAGGGCGGGGCTATCAGTGCTTTAGGGTGTGACTGTAAGTGCTTTAGGGTGGGGCTATCAGTGCTTTAGGGTGTGACTGTCAGTGCTTTAGGGCGGGGCTATCAGTTCTTTAGGGCGTGACTGTCAGTGCTTTTGGGCGGGGCTATCAGTCCTGTAAAAAAGTTGCAGTTAAACTAACAGAAACACGTTTTCCTCCAGAAGAAATATATAATAGGAAACACTGTGATTAATGTCATTGCTCAGCTCTGTTAAACAGCACTTGAGAAATATCTGGGAAAGAATGTCAGATTCCGCAGGAGGGGTGCAGGGTAGGTTTTCTTCATCTGTGTGGTGTTCTGAGCTCAGTCTGCAGTGTGTTTCAGTAAAGCCTCTCGTCTGTTGTGCTGGAGAAACTCTGCTCTGTGAGTGTGAACAGTTTCTCCTCATGTGTCTGCGCTGTACAGGAACGATTTGTCTGAAGTCTAGACGCTCTTCTGTGGGAACGGCTTCATTTCCCAGTTAATAATAGTTTTGCTGGGCTTGAGCAGAAATGTGAGGCATGCGGAGCGGAGCGTGACTCAGTGTTTACTGTCTGTGTTCCTCTGTGGTTTGGTTGCTGCGCTCTGAACATACCTGGAGAACTCTTTCTGCATCTCTGAGCTCACGGCCTGCTTCTGCTCTTAAACTGAGTGTATAATCTCATCTCTGATAATATAGTCCTGGATTAGTGAAGAGTGAGTGGATGTGTTTGAGTGTCCACCACTCATTTAGCACTCATTCACTCTGTCCTCTCATTCATGATGTGAAAGCAGAAGCACAGGCTTTATTCTGATGCTTGATTTGTTTCTGCTTTATTAAACTAGAAACAAGAAAACTATGACAGACTCAACCAGGAGTGTATCTGCTGTATCACAGACTGTAGTGCATTTATTGGCATTAGAAGCAACATATATTAGCTGGCTGGAGCGATTGTTTATTTAAAATGCGAAGTAAAAGCAGTGTGTTGAGCTTGTGAAATTATTCTACATGACACACAGTTGCAGAACAGAGGTGATAAACAGAAATAACGAGTTTATTCTCCGCTAGTAGATGAGGCTTCTAGATCAGGGACGTCAAATTGAATTCCTGGAGGGCTGCAGCTCTACGCAGTTTAGTTCCTCCCTAATTAAACACACCTGATCAAACTAATCCTTCGGCTTGTTTGAAACCTACAGTGTGTGTTACCTACAGGTAAGCAGGGTTGGAACTAAACTGTGCAGGGCTGCGGCCCTCCAGAAATTGAGTTTGACATCCCTGATCTAGACCATTAAAGACGCCTCGCACATAGAGACTGAAGCCTCATGCAGTGCTCAGGTGTGAGTTTCTCTCAGTCTTCATCAGAGTGTGTAAATCTTGATGCTTCTGTGGGTCTCGTCTATCAGATCTGAGCTTTATTCTGTATTCTCTATTGGGTTCGGATCAGGTGATTGGCTGGGCCATTCTACAGATGGATTTTCTCTCTCTCTGAAAGCATCAGTGGTTTGATCTTCATCATCCTGCTGGTGTTTCTGGTGAACATTTGAAGTCAGCAGCACCTTTAGAGAGATGTTTTCTGAGAGAAGTCCATACTCATGTTCCCCGCTGTATTATTAAATGTAGTAATTGTACGTCCTGGTTCTGTTTGTGTGTGTAG
Seq C2 exon
TGCCGACGCAGAAGCCTCCCGCTCTGGGGCCCGTGGCGTTCGCAGCGCTGATCGCGGGGCCGGTGTGTGTGCTGTGTTTCCTGATGGTCACCGTCTTCTACATCTGCCACAGCCGCTCCGTCATTCACCACCGCGTGCCCAGCGAGGAGGACCCGTCCCTGGACCACCCCTTCATCACTGTGGGCACCACACTCAAAGACCTGATCTATGACATGACCACATCTGGATCTGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042259:ENSDART00000061973:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=95.2)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=21.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]