RnoINT0012766 @ rn6
Intron Retention
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142839080-142840182:+
Coord C1 exon
chr7:142839080-142839319
Coord A exon
chr7:142839320-142839933
Coord C2 exon
chr7:142839934-142840182
Length
614 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CACCTTACTCATTTTCTCAGGAC
3' ss Score
7.6
Exon sequences
Seq C1 exon
CTCTGCTGTGTGCATGCACCAGCTGCCTACAGACCAACTACACCTGCGAAACAGATGGGGCCTGCATGGTCTCCATCTTTAACCTGGATGGCATGGAGCACCACGTACGCACCTGCATCCCCAAGGTGGAGCTTGTGCCTGCTGGGAAGCCCTTCTACTGCCTGAGTTCAGAGGACCTGCGCAACACGCACTGCTGCTATATTGACTTCTGCAACAAGATTGACCTGAGGGTGCCCAGTG
Seq A exon
GTGAGTGAGCGGGTCCCCTGTGTCCTCCTCACCTGGAGGCGGGGCTTCTGCCTTTCCATTCTTGTCTGCTCTTTGCAGCCCTTGACTCAGGAGTAGCTAACAGTGGTTTAGTTGCTCTCTGAGGGGATGGCAAAGGATGAACCTCCTCTCTAGGCAGGCGTATTGCTCAGAAGGTGAGGAGAACAGAGCTCCCAGGTACTTGTGGGGTAGAGGCCATCAGCAGCCGAGCTATCTGCTCTGGACACAGGATGAACGGCATGACGAAGAGTGAAATTAGAAGGGAGGTGGTCACAGTGGAGCAGTGTTAAACACTGCCTCGGACAGGCCCCATTTGTCAGGTCTTTCTGGGGAAAGACTGAGCAGACCCTGGAGAGATCAGGCCAGGCTTGCTCCTCTGTGAGCTTCCAGAATAGGTTTGGTTCCACTGTTGGAGGGATGCATCACCGAGAGAAAGCTAGTGTTAGAGAGAATCAAGACACAGGCTAGCCCAGGGAGATCAGAGGAAACCCACAAGTGAGGATCATTCAATCATGGGTGGTCCAGTTTCAGGGATGAATTGGGCCCAGCCATCTCCTGTTTTCACTGTTTGTTCCTCACCTTACTCATTTTCTCAG
Seq C2 exon
GACACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGCCCTGTGGAGCTGGTCGGCATCATTGCCGGTCCTGTCTTCCTCCTCTTCCTCATCATCATCATCGTCTTCCTGGTCATCAACTATCATCAGCGTGTCTACCACAACCGCCAAAGACTGGACATGGAGGACCCCTCATGTGAGATGTGTCTCTCCAAAGACAAGACGCTCCAGGATCTCGTCTACGATCTCTCCACTTCAGGATCGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934:ENSRNOT00000009345:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGGTCTCCATCTTT
R:
GGGTCCTCCATGTCCAGTCTT
Band lengths:
350-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]