MmuALTA0018245-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70724002-70725577:-
Coord C1 exon
chr2:70725480-70725577
Coord A exon
chr2:70724084-70724104
Coord C2 exon
chr2:70724002-70724083
Length
21 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTTTTAATGTGCCGCAGTAGTTT
3' ss Score
0.77
Exon sequences
Seq C1 exon
GAAGAGGCTGAAATCCAGGCGGAACTGGAGCGTTTGGAGAGGGTCCGGAACCTTCACATCCGAGAGCTGAAGAGAATAAACAATGAGGATAATTCACA
Seq A exon
TTTTTTCTCTGCTCTTTTAAG
Seq C2 exon
GTTCAAAGATCATCCAACGTTAAATGAAAGATATTTATTACTTCATCTGCTTGGGAGAGGCGGCTTTAGTGAGGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997-41-32,41-31,41-30-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.7=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCACATCCGAGAGCTGA
R:
GCCTCTCCCAAGCAGATGAAG
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types