MmuALTA0018245-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70562059-70563634:-
Coord C1 exon
chr2:70563537-70563634
Coord A exon
chr2:70562141-70562161
Coord C2 exon
chr2:70562059-70562140
Length
21 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTTTTAATGTGCCGCAGTAGTTT
3' ss Score
0.77
Exon sequences
Seq C1 exon
GAAGAGGCTGAAATCCAGGCGGAACTGGAGCGTTTGGAGAGGGTCCGGAACCTTCACATCCGAGAGCTGAAGAGAATAAACAATGAGGATAATTCACA
Seq A exon
TTTTTTCTCTGCTCTTTTAAG
Seq C2 exon
GTTCAAAGATCATCCAACGTTAAATGAAAGATATTTATTACTTCATCTGCTTGGGAGAGGCGGCTTTAGTGAGGTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997-27-22,27-21,27-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(34.0=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCACATCCGAGAGCTGA
R:
GCCTCTCCCAAGCAGATGAAG
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: