MmuALTA0018670-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30809272-30811429:+
Coord C1 exon
chr2:30809272-30809537
Coord A exon
chr2:30811288-30811297
Coord C2 exon
chr2:30811298-30811429
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
GAGCTGCCTCTCTCTTTGAGGTT
3' ss Score
4.54
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTTGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATTCCAAGAAACCATTGACTCTGTCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTATCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTTTGCACTTCCCTCATGAGCAGAAGATAAAGGTGTACCAG
Seq A exon
GTTGGTCCAG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(90.2=97.9)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACTTCCCTCATGAGCAG
R:
AAAGATGAAGACGGAGCTGCC
Band lengths:
102-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: