MmuALTA0018670-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30953752-30955953:+
Coord C1 exon
chr2:30953752-30954017
Coord A exon
chr2:30955768-30955777
Coord C2 exon
chr2:30955778-30955953
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
GAGCTGCCTCTCTCTTTGAGGTT
3' ss Score
4.54
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTTGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATTCCAAGAAACCATTGACTCTGTCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTATCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTTTGCACTTCCCTCATGAGCAGAAGATAAAGGTGTACCAG
Seq A exon
GTTGGTCCAG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTCATCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(90.2=97.9)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACTTCCCTCATGAGCAG
R:
AAAGATGAAGACGGAGCTGCC
Band lengths:
102-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types