RnoALTA0041751-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006435 | Tor1b
Description
torsin family 1, member B [Source:RGD Symbol;Acc:1308431]
Coordinates
chr3:9793610-9795930:+
Coord C1 exon
chr3:9793610-9793875
Coord A exon
chr3:9795789-9795798
Coord C2 exon
chr3:9795799-9795930
Length
10 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
GAGCCTCGTCTCTCTTTGAGGTT
3' ss Score
3.21
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTCGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATCCCAAGAAACCACTGACTCTATCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTGTCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTCTGCACTTCCCTCATGAGCAGAAGATAAAACTGTACCAG
Seq A exon
GTTGGTCTAG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAACGTGAGCGCGTGCGGCAGCTCCGTTTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGAATCATTGATGCAATCAAGCCCTTCCTGGACTATTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006435-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTTCCCTCATGAGCAG
R:
CAAAGATGAAAACGGAGCTGCC
Band lengths:
103-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]