MmuALTA0019245-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107975797-107976071:+
Coord C1 exon
chr9:107975797-107975965
Coord A exon
chr9:107976055-107976067
Coord C2 exon
chr9:107976068-107976071
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGCACTGAGCTGTCCTTAGTGT
3' ss Score
1.47
Exon sequences
Seq C1 exon
GTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq A exon
TGTTTCCTTTCAG
Seq C2 exon
AAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-1-7,1-6,1-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types