RnoALTA0043049-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754460-116754851:+
Coord C1 exon
chr8:116754460-116754628
Coord A exon
chr8:116754717-116754729
Coord C2 exon
chr8:116754730-116754851
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGCACTGAACTTTTCTTAGTTT
3' ss Score
4.2
Exon sequences
Seq C1 exon
GTATGTACTGGGCTTGCCTGCTATGCAGAGGATCCGGGAAGCCAAAGTCTTGCTGTGTGGCCTGCAGGGCCTGGGAGCTGAGGTGGCCAAGAACCTGGTCCTTATGGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq A exon
TTTTTCCTCTCAG
Seq C2 exon
AAGAGAGCTTGGGAAGGAGCAGGGCTGAGGCCTCTCAACCACAATTGGCCCAGCTTAATGAAGCTGTCCAGATCTCCGTCCACAGAGGCGACATCACTGAGGACCTAGTGCGGGGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGAACCTGGTCCTTA
R:
TGCTCCTTCCCAAGCTCTCTT
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]