MmuALTA0019358-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69954276-69956106:+
Coord C1 exon
chr2:69954276-69954361
Coord A exon
chr2:69955965-69955966
Coord C2 exon
chr2:69955967-69956106
Length
2 bp
Sequences
Splice sites
5' ss Seq
CTCATATCC
5' ss Score
-13.36
3' ss Seq
TTTCTTGACACATACATTATATC
3' ss Score
-6.34
Exon sequences
Seq C1 exon
GGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCCAGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTC
Seq A exon
AT
Seq C2 exon
CCCAGAAAATCCCAACCCCAAAAGTGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATTTTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-30-29,30-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATGACATTCTCAGGGCA
R:
TTGGGGTTGGGATTTTCTGGG
Band lengths:
99-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types