MmuALTA0019493-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000025876 | Unc5a
Description
unc-5 netrin receptor A [Source:MGI Symbol;Acc:MGI:894682]
Coordinates
chr13:54990880-54995940:+
Coord C1 exon
chr13:54990880-54991101
Coord A exon
chr13:54995794-54995796
Coord C2 exon
chr13:54995797-54995940
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AGTGTGGCCTCTGAACCCAGCAG
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTGCCCAGCAGAGTGCCACAGTGGCCAACCCAGTGCCTGGTGCCAACCCGGACCTGCTGCCCCACTTCCTGGTAGAGCCGGAGGACGTGTACATTGTCAAGAACAAGCCCGTGCTGCTGGTGTGCAAGGCTGTGCCCGCCACCCAGATCTTCTTCAAGTGCAACGGGGAATGGGTTCGCCAGGTCGATCACGTCATTGAACGCAGCACTGACGGCAGCAGCG
Seq A exon
CAG
Seq C2 exon
GATTGCCAACCATGGAGGTCCGGATCAACGTATCAAGGCAGCAGGTCGAGAAAGTGTTTGGGCTGGAGGAGTACTGGTGCCAGTGTGTGGCATGGAGCTCCTCAGGAACCACCAAAAGCCAGAAGGCCTACATCCGGATTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025876-7-3,7-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGTCATTGAACGCAGCA
R:
AACACTTTCTCGACCTGCTGC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types